BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX841345.r
(1073 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g22330.1 68415.m02649 cytochrome P450, putative similar ... 1883 0.0
At4g39950.1 68417.m05657 cytochrome P450 79B2, putative (CY... 543 e-153
At1g79370.1 68414.m09249 cytochrome P450 family protein sim... 64 3e-09
At5g01890.1 68418.m00108 leucine-rich repeat transmembrane ... 40 0.038
At2g26780.1 68415.m03212 expressed protein contains Pfam pr... 38 0.15
>At2g22330.1 68415.m02649 cytochrome P450, putative similar to cytochrome P450
79B2 (SP:O81346) [Arabidopsis thaliana]
Length = 1883
Score = 1883 bits (950), Expect = 0.0
Identities = 1030/1054 (97%), Gaps = 2/1054 (0%)
Strand = Plus / Plus
Query: 21 cgaggggttggggttcccgtttgccccttgtataccggattatctacccgacgcttacgg 80
||||||||| ||||| ||||||| ||||||| ||||||||||||| || ||||||||
Sbjct: 779 cgaggggttagggtttacgtttgcgttttgtatatcggattatctacc-gatgcttacgg 837
Query: 81 gat-ggatctaaacggacatgaaaagattatgagagaatccagcgcaattatggataaat 139
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 838 gattggatctaaacggacatgaaaagattatgagagaatccagtgcaattatggataaat 897
Query: 140 atcacgaccctataattgatgagaggattaagatgtggagagaaggtaagagaactcaga 199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 atcacgatcctataattgatgagaggattaagatgtggagagaaggtaagagaactcaga 957
Query: 200 tcgaacaccttctagacattttcatctctatcaaggacgaagctggccagccttcgctta 259
||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 958 tcgaagattttctagacattttcatctctatcaaggacgaagctggccagcctttgctta 1017
Query: 260 ccgctgatgaaatcaaaccaaccattaaggaacttgtaatggcggcgccagacaacccat 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 ccgctgatgaaatcaaaccaaccattaaggaacttgtaatggcggcgccagacaacccat 1077
Query: 320 caaacgccgtggaatgggccattgcggagatcataaacaaaccggagatcctccacaaag 379
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1078 caaacgccgtggaatgggccattgcggagatgataaacaaaccggagatcctccacaaag 1137
Query: 380 ctatggaagagatcgatagagtcgtcggaaaagaaagattcgtccaagaatccgatatac 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1138 ctatggaagagatcgatagagtcgtcggaaaagaaagattcgtccaagaatccgatatac 1197
Query: 440 caaaacttaactatgttaaagctattatccgagaagctttccgtcttcatcccgtcgccg 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1198 caaaacttaactatgttaaagctattatccgagaagctttccgtcttcatcccgtcgccg 1257
Query: 500 ccttcaacctcccacacgtggcactctctgatacgaccgtcgcaggttaccatattccta 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1258 ccttcaacctcccacacgtggcactctctgatacgaccgtcgcaggttaccatattccta 1317
Query: 560 aaggaagtcaagttttacttagccgttacggtcttggtcgtaaccccaaggtttggtctg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1318 aaggaagtcaagttttacttagccgttacggtcttggtcgtaaccccaaggtttggtctg 1377
Query: 620 atccacttagcttcaaaccagaaaggcatctcaatgagtgttcggaagtgactttgacgg 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1378 atccacttagcttcaaaccagaaaggcatctcaatgagtgttcggaagtgactttgacgg 1437
Query: 680 agaatgatctccgccttatctcgtttagtaccggaaagagaggatgtgctgctccggcgt 739
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1438 agaatgatctccgttttatctcgtttagtaccggaaagagaggatgtgctgctccggcgt 1497
Query: 740 taggtacggcgataacgaccatgatgctagcgaggctttcgcaagggcttaagtggaaac 799
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 1498 taggtacggcgataacgaccatgatgctagcgaggcttttgcaagggtttaagtggaaac 1557
Query: 800 tagcaggaagtgagacacgtgtcgagcttatggaatcgagtcatgatatgtctctctcga 859
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 1558 tagcaggaagtgagacacgtgtcgagcttatggaatcgagtcatgatatgtttctttcga 1617
Query: 860 agcctttggtgttggtcggagaattgagattgtcggaggacctttacccaatggtgaagt 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1618 agcctttggtgttggtcggagaattgagattgtcggaggacctttacccaatggtgaagt 1677
Query: 920 gaggcgacggtgacgtacggcgaggataattccgtatatactatggataacccaaagttt 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1678 gaggcgacggtgacgtacggcgaggataattccgtatatactatggataacccaaagttt 1737
Query: 980 agtgaatcacaaaccaaactttgttcggttttggtccttttggaaacacttgatctgtgt 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1738 agtgaatcacaaaccaaactttgttcggttttggtccttttggaaacacttgatctgtgt 1797
Query: 1040 tttctcttgctcttttctatatgtatgtattaat 1073
||||||||||| ||||||||||||||||||||||
Sbjct: 1798 tttctcttgcttttttctatatgtatgtattaat 1831
>At4g39950.1 68417.m05657 cytochrome P450 79B2, putative (CYP79B2) identical to
cytochrome P450 (79B2) SP:O81346 from [Arabidopsis
thaliana]
Length = 1986
Score = 543 bits (274), Expect = e-153
Identities = 643/766 (83%)
Strand = Plus / Plus
Query: 85 gatctaaacggacatgaaaagattatgagagaatccagcgcaattatggataaatatcac 144
||||| ||||| || || ||||||||||||||||| || || |||||||| || |||||
Sbjct: 855 gatcttaacggtcacgagaagattatgagagaatcaagtgcgattatggacaagtatcat 914
Query: 145 gaccctataattgatgagaggattaagatgtggagagaaggtaagagaactcagatcgaa 204
||||| || || || |||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 915 gacccaatcatcgacgagaggatcaagatgtggagagaaggaaagagaactcaaatcgaa 974
Query: 205 caccttctagacattttcatctctatcaaggacgaagctggccagccttcgcttaccgct 264
| |||| || ||||||||||||||||| |||||| ||| | || | |||||||||
Sbjct: 975 gattttcttgatattttcatctctatcaaagacgaacaaggcaacccattgcttaccgcc 1034
Query: 265 gatgaaatcaaaccaaccattaaggaacttgtaatggcggcgccagacaacccatcaaac 324
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 1035 gatgaaatcaaacccaccattaaggagcttgtaatggcggcgccagacaatccatcaaac 1094
Query: 325 gccgtggaatgggccattgcggagatcataaacaaaccggagatcctccacaaagctatg 384
||||||||||||||||| |||||||| | |||||||||||||| |||| ||||| |||
Sbjct: 1095 gccgtggaatgggccatggcggagatggtgaacaaaccggagattctccgtaaagcaatg 1154
Query: 385 gaagagatcgatagagtcgtcggaaaagaaagattcgtccaagaatccgatataccaaaa 444
||||||||||| ||||||||||| ||||| ||| |||| ||||||||||| || ||||||
Sbjct: 1155 gaagagatcgacagagtcgtcgggaaagagagactcgttcaagaatccgacatcccaaaa 1214
Query: 445 cttaactatgttaaagctattatccgagaagctttccgtcttcatcccgtcgccgccttc 504
|| ||||| || |||||||| |||| |||||||||||||| ||||||||||||||||||
Sbjct: 1215 ctaaactacgtcaaagctatcctccgcgaagctttccgtctccatcccgtcgccgccttc 1274
Query: 505 aacctcccacacgtggcactctctgatacgaccgtcgcaggttaccatattcctaaagga 564
|||||||| ||||||||||| ||||| || |||||||| || || || || |||||||||
Sbjct: 1275 aacctcccccacgtggcactttctgacacaaccgtcgccggatatcacatccctaaagga 1334
Query: 565 agtcaagttttacttagccgttacggtcttggtcgtaaccccaaggtttggtctgatcca 624
|||||||| | |||||||| || || || || |||||||| || |||||| | || |||
Sbjct: 1335 agtcaagtccttcttagccgatatgggctgggccgtaacccaaaagtttgggccgaccca 1394
Query: 625 cttagcttcaaaccagaaaggcatctcaatgagtgttcggaagtgactttgacggagaat 684
||| |||| ||||| || || |||||||| || || || ||||| |||||||| |||||
Sbjct: 1395 ctttgctttaaaccggagagacatctcaacgaatgctccgaagttactttgaccgagaac 1454
Query: 685 gatctccgccttatctcgtttagtaccggaaagagaggatgtgctgctccggcgttaggt 744
|||||||| |||||||||| |||||||| || ||||| ||||| ||||||||| ||||
Sbjct: 1455 gatctccggtttatctcgttcagtaccgggaaaagaggttgtgcggctccggcgctagga 1514
Query: 745 acggcgataacgaccatgatgctagcgaggctttcgcaagggcttaagtggaaactagca 804
|||||| | || || |||||||| ||||| ||| ||||| | | ||||| ||| |
Sbjct: 1515 acggcgttgaccacgatgatgctcgcgagacttcttcaaggtttcacttggaagctacct 1574
Query: 805 ggaagtgagacacgtgtcgagcttatggaatcgagtcatgatatgt 850
| | |||||||||||||||||| ||||| || ||||| |||||||
Sbjct: 1575 gagaatgagacacgtgtcgagctgatggagtctagtcacgatatgt 1620
>At1g79370.1 68414.m09249 cytochrome P450 family protein similar to cytochrome
P450 GI:984542 [Sorghum bicolor]; similar to cytochrome
P450 GI:6739530 [Manihot esculenta]
Length = 1641
Score = 63.9 bits (32), Expect = 3e-09
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 383 tggaagagatcgatagagtcgtcggaaaagaaagattcgtccaagaatccgatataccaa 442
||||||||||||||| || ||||||||||||||| | || ||||||||||| ||||||
Sbjct: 1091 tggaagagatcgatatggttgtcggaaaagaaagacttgttcaagaatccgacgtaccaa 1150
Query: 443 aacttaactatgttaaagct 462
| || ||||| || ||||||
Sbjct: 1151 atctaaactacgtcaaagct 1170
>At5g01890.1 68418.m00108 leucine-rich repeat transmembrane protein kinase,
putative leucine-rich receptor-like protein (LRPKm1) -
Malus domestica, EMBL:AF053127
Length = 3499
Score = 40.1 bits (20), Expect = 0.038
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1035 tgtgttttctcttgctcttttcta 1058
||||||||||||| ||||||||||
Sbjct: 225 tgtgttttctctttctcttttcta 248
>At2g26780.1 68415.m03212 expressed protein contains Pfam profile TBP
(TATA-binding protein) -interacting protein 120 (TIP120);
contains TIGRFAM profile TIGR01612: reticulocyte binding
protein
Length = 5824
Score = 38.2 bits (19), Expect = 0.15
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1021 ggaaacacttgatctgtgt 1039
|||||||||||||||||||
Sbjct: 4126 ggaaacacttgatctgtgt 4144
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,190
Number of Sequences: 29161
Number of extensions: 29190
Number of successful extensions: 664
Number of sequences better than 10.0: 65
length of query: 1073
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1055
effective length of database: 43,533,334
effective search space: 45927667370
effective search space used: 45927667370
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)