BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX836189.r
(1026 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80310.1 68414.m09402 expressed protein 1949 0.0
At5g40510.1 68418.m04914 expressed protein 40 0.036
At3g55130.1 68416.m06122 ABC transporter family protein bre... 38 0.14
At3g04260.1 68416.m00450 SAP domain-containing protein cont... 38 0.14
At2g25140.1 68415.m03007 heat shock protein 100, putative /... 38 0.14
>At1g80310.1 68414.m09402 expressed protein
Length = 1937
Score = 1949 bits (983), Expect = 0.0
Identities = 1017/1026 (99%), Gaps = 3/1026 (0%)
Strand = Plus / Plus
Query: 1 gagttataaacaatacaaacactgagtgctgctgagtgagtctctctattgctacctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagttataaacaatacaaacactgagtgctgctgagtgagtctctctattgctacctgaa 60
Query: 61 aaaaaggaaagcgtttgcgcgaaaaaaaaaaaaacagcaggtagttgtactgttgtaaca 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 61 aaaaaggaaagcgtttgcgcgaaaaaaaaaaa--cagcaggtagttgtactgttgtaaca 118
Query: 121 atattttcacatggtcccgggaaattcaataaattatttattttagatacaagatggttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atattttcacatggtcccgggaaattcaataaattatttattttagatacaagatggttg 178
Query: 181 atatttgcacgtcgttaggacattggactcgtccagtgtctgaaaagccgtcttttatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 atatttgcacgtcgttaggacattggactcgtccagtgtctgaaaagccgtcttttatcc 238
Query: 241 aacttccccggggattcccaatcctttttatctttcttatcaaatagaattgtcaaccaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aacttccccggggattcccaatcctttttatctttcttatcaaatagaattgtcaaccaa 298
Query: 301 cagagagaaagagagctttgactttagatccaatcatggagacaactacaactcctctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cagagagaaagagagctttgactttagatccaatcatggagacaactacaactcctctgc 358
Query: 361 tccccggtgatcgcagcagatgcgggggggtccgtcgccgtctccgcctcaaaaaccctc 420
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 359 tccccggtgatcgcagcagatgcgggtggctccgtcgccgtctccgcctcaaaaaccctc 418
Query: 421 tttcttctgaactctccggcgctgtcggtgatctcggcaccttcatccccatcgtcctta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tttcttctgaactctccggcgctgtcggtgatctcggcaccttcatccccatcgtcctta 478
Query: 481 cactaactctagtctccaatcttgatctctccaccactctcatcttcactggtttctaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cactaactctagtctccaatcttgatctctccaccactctcatcttcactggtttctaca 538
Query: 541 acatcgccaccggtctcctctttgacatccctatgcccgtccagcccatgaaatccatcg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 acatcgccaccggtctcctctttgacatccctatgcccgtccagcccatgaaatccatcg 598
Query: 601 ccgctgtcgctgtctccgaatccccgcatctaactccttctcagattgccgccgctggtg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ccgctgtcgctgtctccgaatccccgcatctaactccttctcagattgccgccgctggtg 658
Query: 661 catccactgccgccacgctcctcctccttggcgccaccggagctatgtctttcctctaca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 catccactgccgccacgctcctcctccttggcgccaccggagctatgtctttcctctaca 718
Query: 721 acatcatccctctcccagttgtacgcggcgtccagctttctcaaggtcttcagttcgcct 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 acatcatccctctcccagttgtacgcggcgtccagctttctcaaggtcttcagttcgcct 778
Query: 781 tcaccgccatcaaatacgtcaggtttaattacgatactgccactctcaaaccctcttctt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tcaccgccatcaaatacgtcaggtttaattacgatactgccactctcaaaccctcttctt 838
Query: 841 ctcctcgtatttggcttggcctcgacggccttatcttggctctagctgctctgctcttca 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ctcctcgtatttggcttggcctcgacggccttatcttggctctagctgctctgctcttca 898
Query: 901 tcattttctacaccggctctggcaacgacagaaaagctgaagatggagatctcgccgaga 960
||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 899 tcattttgtccaccggctctggcaacgacagagaagctgaagatggagatctcgccgaga 958
Query: 961 cttccagcaaagaaagccagtctcgccgggaggagactgcgtcttctgtcttcgattcca 1020
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 959 cttccagcaacgaaagccagtctcgcc-ggaggagactgcgtcttctgtcttcgattcca 1017
Query: 1021 tctgcg 1026
||||||
Sbjct: 1018 tctgcg 1023
Score = 42.1 bits (21), Expect = 0.009
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1002 tcttctgtcttcgattccatctgcg 1026
|||| ||||||||||||||||||||
Sbjct: 1796 tcttatgtcttcgattccatctgcg 1820
>At5g40510.1 68418.m04914 expressed protein
Length = 1391
Score = 40.1 bits (20), Expect = 0.036
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 306 agaaagagagctttgacttt 325
||||||||||||||||||||
Sbjct: 62 agaaagagagctttgacttt 43
>At3g55130.1 68416.m06122 ABC transporter family protein breast cancer
resistance protein 1 BCRP1, Mus musculus, EMBL:NP_036050
Length = 2513
Score = 38.2 bits (19), Expect = 0.14
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 806 taattacgatactgccact 824
|||||||||||||||||||
Sbjct: 937 taattacgatactgccact 919
>At3g04260.1 68416.m00450 SAP domain-containing protein contains Pfam domain
PF02037: SAP domain
Length = 2950
Score = 38.2 bits (19), Expect = 0.14
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 505 atctctccaccactctcat 523
|||||||||||||||||||
Sbjct: 1558 atctctccaccactctcat 1540
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100, putative /
heat shock protein clpB, putative / HSP100/ClpB, putative
similar to HSP100/ClpB GI:9651530 [Phaseolus lunatus]
Length = 3223
Score = 38.2 bits (19), Expect = 0.14
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 933 aaagctgaagatggagatc 951
|||||||||||||||||||
Sbjct: 1594 aaagctgaagatggagatc 1612
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,269
Number of Sequences: 29161
Number of extensions: 47269
Number of successful extensions: 1647
Number of sequences better than 10.0: 145
length of query: 1026
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1008
effective length of database: 43,533,334
effective search space: 43881600672
effective search space used: 43881600672
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)