BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX835358.r
(1067 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g01090.1 68417.m00147 extra-large G-protein-related cont... 2091 0.0
At1g01440.1 68414.m00059 extra-large G-protein-related weak... 149 6e-35
At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3)... 42 0.010
At3g61670.1 68416.m06911 expressed protein weak similarity ... 40 0.038
At3g47620.1 68416.m05184 TCP family transcription factor, p... 40 0.038
>At4g01090.1 68417.m00147 extra-large G-protein-related contains weak similarity
to extra-large G-protein [Arabidopsis thaliana]
gi|3201682|gb|AAC19353
Length = 2884
Score = 2091 bits (1055), Expect = 0.0
Identities = 1065/1067 (99%), Gaps = 1/1067 (0%)
Strand = Plus / Plus
Query: 1 gaaaaaaacaaagcaaaaccctagaaatagtggctgatgaggtcgcgaggcgatgtctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaaaaaaacaaagcaaaaccctagaaatagtggctgatgaggtcgcgaggcgatgtctct 455
Query: 61 gaagcagaaggtacgagatcagatgctggttcttcaagaagcgaagaagaaacgagtctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaagcagaaggtacgagatcagatgctggttcttcaagaagcgaagaagaaacgagtctg 515
Query: 121 aaggagaaacactcaaattcgcgagctgggtctcaaagatctggaaaaagcttgagaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aaggagaaacactcaaattcgcgagctgggtctcaaagatctggaaaaagcttgagaaat 575
Query: 181 gacgagcctaattacggatcagattcttcatctaagaacacaagcagcagcaacaaccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gacgagcctaattacggatcagattcttcatctaagaacacaagcagcagcaacaaccct 635
Query: 241 attgagtatacagagcatgaacgagctgagcttttaagaaggttagattctatcaaagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 attgagtatacagagcatgaacgagctgagcttttaagaaggttagattctatcaaagat 695
Query: 301 catctacttcgcggtggtggtggtggtaataatgtagttgataaacctaaagaaccagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 catctacttcgcggtggtggtggtggtaataatgtagttgataaacctaaagaaccagat 755
Query: 361 cagaatcagcctttccttagaccagttcatcttcatggtcatgctaatcataatcctggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 cagaatcagcctttccttagaccagttcatcttcatggtcatgctaatcataatcctggt 815
Query: 421 ccttcttattaccatcagtatccagaacctattcaataccctggaccggttcatggaatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ccttcttattaccatcagtatccagaacctattcaataccctggaccggttcatggaatg 875
Query: 481 tatcctcaagcttatcaagatccttatgggtaccaaagaagaccacctccagttcctaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 tatcctcaagcttatcaagatccttatgggtaccaaagaagaccacctccagttcctaat 935
Query: 541 ccaaactggtatcctcctggtcattaccctaatcagatggctcgtcagtatcctggaggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 ccaaactggtatcctcctggtcattaccctaatcagatggctcgtcagtatcctggaggt 995
Query: 601 caatatgttgaacttggtcctgatatagttaagccacattcttactatccagctactcct 660
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 996 caatatgttgaacttggtcctgatatagttgagccacattcttactatccagctactcct 1055
Query: 661 ggtaggtacggtgacctgcctccgtatagcccggtttcgtctcacacatcgtgaagagaa 720
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1056 ggtaggtacggtgacctgcctccgtatagcccggtttcgtctcac-catcgtgaagagaa 1114
Query: 721 actcgctacacagtacagtgatatgcctccgtatagcccggtttcgtctcaccatcgtgg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1115 actcgctacacagtacagtgatatgcctccgtatagcccggtttcgtctcaccatcgtgg 1174
Query: 781 cgagaaactcacgacaccgtatagtccacgtgttaataacggttcgagttttccttcttc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1175 cgagaaactcacgacaccgtatagtccacgtgttaataacggttcgagttttccttcttc 1234
Query: 841 gatgggcactccaggtcctcgaggtggttatgcaaggtggccgagtgaacatgattctga 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1235 gatgggcactccaggtcctcgaggtggttatgcaaggtggccgagtgaacatgattctga 1294
Query: 901 aatgggcggtgcttttgctcgtgggtatgttaagaaagctgtatcggatactggtgttcg 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1295 aatgggcggtgcttttgctcgtgggtatgttaagaaagctgtatcggatactggtgttcg 1354
Query: 961 acgttgtcatcctcttgctggtggtgctccttttatagcttgtcatagttgctttgagct 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355 acgttgtcatcctcttgctggtggtgctccttttatagcttgtcatagttgctttgagct 1414
Query: 1021 gctttacttgcctaagaagaagcttttgtctcaggaaaggttacata 1067
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1415 gctttacttgcctaagaagaagcttttgtctcaggaaaggttacata 1461
>At1g01440.1 68414.m00059 extra-large G-protein-related weak similarity to
extra-large G-protein (AtXLG1) (GI:3201682) [Arabidopsis
thaliana]
Length = 1995
Score = 149 bits (75), Expect = 6e-35
Identities = 147/171 (85%)
Strand = Plus / Plus
Query: 875 aggtggccgagtgaacatgattctgaaatgggcggtgcttttgctcgtgggtatgttaag 934
|||||||| |||||| ||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 721 aggtggcctagtgaaattgattctgaaatgggtggtgcttttgctcgtgggtatgttcaa 780
Query: 935 aaagctgtatcggatactggtgttcgacgttgtcatcctcttgctggtggtgctcctttt 994
||||||| || ||||||| | || ||||| |||||||| || || ||||| ||||||
Sbjct: 781 caagctgtgtctgatactgattcacgtcgttgccatcctctagcaggcggtgcgcctttt 840
Query: 995 atagcttgtcatagttgctttgagctgctttacttgcctaagaagaagctt 1045
|| |||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct: 841 attgcttgtcacagttgctttgagctgctatatgtgcctaagaagaagctt 891
Score = 52.0 bits (26), Expect = 1e-05
Identities = 83/102 (81%)
Strand = Plus / Plus
Query: 204 ttcttcatctaagaacacaagcagcagcaacaaccctattgagtatacagagcatgaacg 263
|||||| ||||||||||||| || ||| |||||||| ||| |||| || || | |||
Sbjct: 195 ttcttcttctaagaacacaaccaccagaaacaacccaattcagtacactgataaacaaca 254
Query: 264 agctgagcttttaagaaggttagattctatcaaagatcatct 305
||| |||||||| |||| | | |||||||| |||||||||||
Sbjct: 255 agccgagcttttgagaaagcttgattctattaaagatcatct 296
Score = 40.1 bits (20), Expect = 0.038
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 560 gtcattaccctaatcagatg 579
||||||||||||||||||||
Sbjct: 515 gtcattaccctaatcagatg 534
>At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3) identical to
non-phototropic hypocotyl 3 [Arabidopsis thaliana]
gi|6224712|gb|AAF05914, PMID:10542152
Length = 3349
Score = 42.1 bits (21), Expect = 0.010
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 313 ggtggtggtggtggtaataat 333
|||||||||||||||||||||
Sbjct: 1705 ggtggtggtggtggtaataat 1725
>At3g61670.1 68416.m06911 expressed protein weak similarity to extra-large
G-protein [Arabidopsis thaliana] GI:3201682
Length = 2863
Score = 40.1 bits (20), Expect = 0.038
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 418 ggtccttcttattaccatca 437
||||||||||||||||||||
Sbjct: 1101 ggtccttcttattaccatca 1120
>At3g47620.1 68416.m05184 TCP family transcription factor, putative auxin-induced
basic helix-loop-helix transcription factor - Gossypium
hirsutum, EMBL:AF165924
Length = 1919
Score = 40.1 bits (20), Expect = 0.038
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 313 ggtggtggtggtggtaataa 332
||||||||||||||||||||
Sbjct: 1173 ggtggtggtggtggtaataa 1192
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 39,697
Number of Sequences: 29161
Number of extensions: 39697
Number of successful extensions: 1440
Number of sequences better than 10.0: 169
length of query: 1067
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1049
effective length of database: 43,533,334
effective search space: 45666467366
effective search space used: 45666467366
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)