BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX834847.r
(1082 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53510.1 68416.m05908 ABC transporter family protein bre... 2002 0.0
At2g37360.1 68415.m04582 ABC transporter family protein 240 2e-62
At3g55090.1 68416.m06118 ABC transporter family protein ATP... 84 3e-15
At2g39350.1 68415.m04830 ABC transporter family protein 76 7e-13
At3g55110.1 68416.m06120 ABC transporter family protein ATP... 64 3e-09
>At3g53510.1 68416.m05908 ABC transporter family protein breast cancer resistance
protein (BCRP), Homo sapiens, EMBL:AF098951
Length = 2650
Score = 2002 bits (1010), Expect = 0.0
Identities = 1065/1082 (98%), Gaps = 1/1082 (0%)
Strand = Plus / Plus
Query: 1 ctaaaataggatttttttacagagtaccttaagccccaagaaaaaatacatacaataacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctaaaataggatttttttacagagtaccttaagccccaagaaaaaatacatacaataacg 60
Query: 61 gaaaaatgtggatggatttgcccaactcctcacctactcgtaacttacaatttatataca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaaaaatgtggatggatttgcccaactcctcacctactcgtaacttacaatttatataca 120
Query: 121 tacgaaaatataaacaaaagctatgtacatgtaaatatgaaaagctacaaaacccagaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tacgaaaatataaacaaaagctatgtacatgtaaatatgaaaagctacaaaacccagaac 180
Query: 181 aactcaaagttagatacttagagatcaccaaactaattgacaagtttctccctcattctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aactcaaagttagatacttagagatcaccaaactaattgacaagtttctccctcattctc 240
Query: 241 ccatccaaatatcctataaagtcgatcaaaattgttctgtgggtaatacctttagacaca 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 241 ccatccaaatatcctataaagtcgatcaaaattgttctgtgggtaagacctttagacaca 300
Query: 301 ttacctgggggcaaagcattaaccagacaataattgacgtgatgtgtggtttgttcggta 360
||||||| || |||| ||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 301 ttacctgaggccaaaacattaaccagacaataattcacgtgatgtctggtttgttcggta 360
Query: 361 tattatctccgggcaaacgggtgaatggggaaggcctccctctgttttacaatatcccac 420
|||||||||||| ||||||||| ||||| || ||||||||||||||||||||||||| ||
Sbjct: 361 tattatctccggccaaacgggtcaatggcgatggcctccctctgttttacaatatcc-ac 419
Query: 421 aagtcagtggagcttcagagatgtcacagagacactgcgcgggtgtctgtcacacttgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aagtcagtggagcttcagagatgtcacagagacactgcgcgggtgtctgtcacacttgca 479
Query: 481 gaacttctcatgagtgtggaagatgagggggatgaccagagtcgggctatggatattgcg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gaacttctcatgagtgtggaagatgagggggatgaccagagtcgggctatggatattgcg 539
Query: 541 gttgcgtccaatttctggtcctcggttccgtcttctcgtgtgccttcttcttctccgttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gttgcgtccaatttctggtcctcggttccgtcttctcgtgtgccttcttcttctccgttt 599
Query: 601 gttctttccttcaaagacttgacttacagcgtgaagatcaagaagaagtttaagcccttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gttctttccttcaaagacttgacttacagcgtgaagatcaagaagaagtttaagcccttt 659
Query: 661 ccttgttgtgggaattcaccttttgatggtaatgatatggagatgaatactaaggtgcgc 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 660 ccttgttgtgggaattcaccttttgatggtaatgatatggagatgaatactaaggtgctc 719
Query: 721 cggaatggtatttctggtgaagcccgggggggggggatgatggctgttcttggagcgagc 780
| |||||||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct: 720 ctgaatggtatttctggtgaagcccgggaaggagagatgatggctgttcttggagcgagc 779
Query: 781 gggtcagggaaatcaacgcttatcgatgcattagccaatcggatttcaaaagagagccta 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gggtcagggaaatcaacgcttatcgatgcattagccaatcggatttcaaaagagagccta 839
Query: 841 cgcggtgatattactttaaatggggaagttcttgaatctagcctgcataaagtcatatca 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 cgcggtgatattactttaaatggggaagttcttgaatctagcctgcataaagtcatatca 899
Query: 901 gcttatgtgatgcaagatgatcttctcttcccgatgctcaccgtggaagagacgttgatg 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gcttatgtgatgcaagatgatcttctcttcccgatgctcaccgtggaagagacgttgatg 959
Query: 961 ttttctgctgagttcaggcttccaagctcgctttctaagaagaaaaagaaggcacgggtt 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 ttttctgctgagttcaggcttccaagctcgctttctaagaagaaaaagaaggcacgggtt 1019
Query: 1021 caagctctgattgatcagctcggcctgaggaacgcagcaaaaaccgtgatcggtgatgag 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 caagctctgattgatcagctcggcctgaggaacgcagcaaaaaccgtgatcggtgatgag 1079
Query: 1081 gg 1082
||
Sbjct: 1080 gg 1081
>At2g37360.1 68415.m04582 ABC transporter family protein
Length = 2366
Score = 240 bits (121), Expect = 2e-62
Identities = 298/357 (83%)
Strand = Plus / Plus
Query: 723 gaatggtatttctggtgaagcccgggggggggggatgatggctgttcttggagcgagcgg 782
|||||||||||| ||||||||||| | |||| ||||||||| ||||||||||| || ||
Sbjct: 500 gaatggtatttcaggtgaagcccgcgaaggggagatgatggcggttcttggagcaagtgg 559
Query: 783 gtcagggaaatcaacgcttatcgatgcattagccaatcggatttcaaaagagagcctacg 842
||| || |||||||| || ||||||||||||||||| ||||| ||||||| ||||| |
Sbjct: 560 gtccggtaaatcaacactgatcgatgcattagccaaccggatcgcaaaagatagcctcag 619
Query: 843 cggtgatattactttaaatggggaagttcttgaatctagcctgcataaagtcatatcagc 902
|| ||||| ||||| || |||||||||||||| ||| |||| ||||||||||| ||
Sbjct: 620 gggatccattaccttaaacggagaagttcttgaatcaagcatgcagaaagtcatatcggc 679
Query: 903 ttatgtgatgcaagatgatcttctcttcccgatgctcaccgtggaagagacgttgatgtt 962
||| ||||||||||| || ||||||||||||||||| |||||||| || || | |||||
Sbjct: 680 ttacgtgatgcaagacgaccttctcttcccgatgcttaccgtggaggaaactctaatgtt 739
Query: 963 ttctgctgagttcaggcttccaagctcgctttctaagaagaaaaagaaggcacgggttca 1022
||||| ||||||||||| || | || || || |||||||| ||||| ||| |||||||
Sbjct: 740 ctctgcagagttcaggctccctcgttcactctccaagaagaagaagaaagcaagggttca 799
Query: 1023 agctctgattgatcagctcggcctgaggaacgcagcaaaaaccgtgatcggtgatga 1079
|||||||||||| || | ||||| |||| ||| |||||||||||||| ||||||||
Sbjct: 800 agctctgattgaccaattaggcctaaggagcgctgcaaaaaccgtgattggtgatga 856
Score = 87.7 bits (44), Expect = 2e-16
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 586 tcttcttctccgtttgttctttccttcaaagacttgacttacagcgtgaagatcaagaag 645
|||||||| |||||||||||||| |||| |||||||| ||||||||||||||| |||||
Sbjct: 372 tcttcttccccgtttgttctttcattcactgacttgacctacagcgtgaagatccagaag 431
Query: 646 aagtttaa 653
||||||||
Sbjct: 432 aagtttaa 439
>At3g55090.1 68416.m06118 ABC transporter family protein ATP-binding
cassette-sub-family G-member 2, Mus musculus,
EMBL:AF140218
Length = 2163
Score = 83.8 bits (42), Expect = 3e-15
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 889 aaagtcatatcagcttatgtgatgcaagatgatcttctcttcccgatgctcaccgtggaa 948
||||| || ||||||||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct: 442 aaagttatctcagcttatgtaatgcaagacgatcttctcttcccgatgcttactgtggaa 501
Query: 949 gagacgttgatgttttctgctgagtt 974
|| || || |||||| | ||||||||
Sbjct: 502 gaaaccttaatgtttgcagctgagtt 527
Score = 46.1 bits (23), Expect = 6e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 766 gttcttggagcgagcgggtcagggaaatcaacgcttatcgatgcattagccaatcggat 824
||||||||||| ||||||||||| ||||| || | ||||| || ||||| ||||||||
Sbjct: 319 gttcttggagctagcgggtcaggtaaatccactttgatcgacgctttagcgaatcggat 377
>At2g39350.1 68415.m04830 ABC transporter family protein
Length = 2862
Score = 75.8 bits (38), Expect = 7e-13
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 889 aaagtcatatcagcttatgtgatgcaagatgatcttctcttcccgatgctcaccgtggaa 948
||||| ||||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||
Sbjct: 657 aaagttatatcagcttacgtgatgcaagatgaccttctcttcccaatgcttaccgttgaa 716
Query: 949 ga 950
||
Sbjct: 717 ga 718
Score = 60.0 bits (30), Expect = 4e-08
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 760 atggctgttcttggagcgagcgggtcagggaaatcaacgcttatcgatgcattagccaat 819
||||||||||| || || ||||| || || |||||||| || |||||||||||||| |||
Sbjct: 528 atggctgttctaggcgctagcggctcgggaaaatcaacactgatcgatgcattagcgaat 587
Query: 820 cggatt 825
||||||
Sbjct: 588 cggatt 593
>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
cassette-sub-family G-member 2, Mus musculus,
EMBL:AF140218
Length = 2490
Score = 63.9 bits (32), Expect = 3e-09
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 889 aaagtcatatcagcttatgtgatgcaagatgatcttctcttcccgatgctcaccgt 944
||||| ||||| || |||||||||||||| |||||||| || ||||||||||||||
Sbjct: 635 aaagtgatatcggcgtatgtgatgcaagacgatcttctttttccgatgctcaccgt 690
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,115
Number of Sequences: 29161
Number of extensions: 44115
Number of successful extensions: 1122
Number of sequences better than 10.0: 106
length of query: 1082
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1064
effective length of database: 43,533,334
effective search space: 46319467376
effective search space used: 46319467376
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)