BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX834755.r
(1019 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57140.2 68416.m06362 patatin-related contains Patatin d... 1957 0.0
At3g57140.1 68416.m06361 patatin-related contains Patatin d... 1592 0.0
At5g04040.1 68418.m00384 patatin-related contains Patatin d... 98 2e-19
At2g39200.1 68415.m04815 seven transmembrane MLO family pro... 38 0.14
At5g09850.1 68418.m01139 transcription elongation factor-re... 36 0.56
>At3g57140.2 68416.m06362 patatin-related contains Patatin domain PF01734
Length = 3007
Score = 1957 bits (987), Expect = 0.0
Identities = 1012/1019 (99%), Gaps = 1/1019 (0%)
Strand = Plus / Plus
Query: 1 taaaaacgaaatcttgaagtccggtattatacatcggaatcttttctttttctatgttat 60
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 taaaaacgaaatcttgaagtcctctattatacatcggaatcttttctttttctatgttat 60
Query: 61 cttgcagggccctatgcctcccatcacttgctgtctcatctttctcaatttcattcctcg 120
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttgcagatccctatgcctcccatcacttgctgtctcatctttctcaatttcattcctcg 120
Query: 121 gtgggttagcgatatctccttctcttctctaatgggtttgaaaaaatcgattttttgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtgggttagcgatatctccttctcttctctaatgggtttgaaaaaatcgattttttgatt 180
Query: 181 catctgattctggtcttacagacaaaattggcatctgggttcgattctttgtgtccgtcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catctgattctggtcttacagacaaaattggcatctgggttcgattctttgtgtccgtcg 240
Query: 241 taaaaaccagtgattaggttctcgtcttcgagtcggagacaatggatataagcaacgaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taaaaaccagtgattaggttctcgtcttcgagtcggagacaatggatataagcaacgaag 300
Query: 301 caggcgttgatgcgttctcaattataggacccacgactataatcggaagaacaattgccg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caggcgttgatgcgttctcaattataggacccacgactataatcggaagaacaattgccg 360
Query: 361 tccggatcttgttctgcaactccgtgtctatattcagacacaaagttttcagaattctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tccggatcttgttctgcaactccgtgtctatattcagacacaaagttttcagaattctca 420
Query: 421 aatttttcctcagaggaggtagggttttactatcaccgtttgtgtccttgctacatccca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatttttcctcagaggaggtagggttttactatcaccgtttgtgtccttgctacatccca 480
Query: 481 ggaatccacaagggatattagtaatggtgacgacgatggcctttctgttgaaccgctaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggaatccacaagggatattagtaatggtgacgacgatggcctttctgttgaaccgctaca 540
Query: 541 caagcttaaaagcaaaggctgagatggcttacaggagaaaattttggaggaacatgatga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caagcttaaaagcaaaggctgagatggcttacaggagaaaattttggaggaacatgatga 600
Query: 601 gagctgcattgacatatgaggaatggtctcacgccgcaaagatgctagataaagagactc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gagctgcattgacatatgaggaatggtctcacgccgcaaagatgctagataaagagactc 660
Query: 661 ccaaggtgaacgagacagatctttttgatgtggagctcgtaagtaataagcttgatgaac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ccaaggtgaacgagacagatctttttgatgtggagctcgtaagtaataagcttgatgaac 720
Query: 721 ttaagcatagacgtcatgagggctctcttagagacattattttctgtatgagagctgatc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttaagcatagacgtcatgagggctctcttagagacattattttctgtatgagagctgatc 780
Query: 781 ttatgagaaatctcggtaacatgtgtaaccctgagcttcacaagggaaggcttcacgtgc 840
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ttgtgagaaatctcggtaatatgtgtaaccctgagcttcacaagggaaggcttcacgtgc 840
Query: 841 cgagactcatcaaagagtatatcgatgaggtctctacacagcttaggatggtttgcgaca 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cgagactcatcaaagagtatatcgatgaggtctctacacagcttaggatggtttgcgaca 900
Query: 901 tggacactgaagagctttctctggaggagaaactttcttttatgcatgagaccagacacg 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tggacactgaagagctttctctggaggagaaactttcttttatgcatgagaccagacacg 960
Query: 961 cgtatggaagaacagctctacttctcagtggaggagcttctcttgggggctttccatct 1019
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 961 cgtatggaagaacagctctacttctcagtggaggagcttctctt-ggggctttccatct 1018
Score = 32.2 bits (16), Expect = 8.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 161 aaaaaatcgatttttt 176
||||||||||||||||
Sbjct: 176 aaaaaatcgatttttt 161
>At3g57140.1 68416.m06361 patatin-related contains Patatin domain PF01734
Length = 2837
Score = 1592 bits (803), Expect = 0.0
Identities = 816/819 (99%), Gaps = 1/819 (0%)
Strand = Plus / Plus
Query: 201 gacaaaattggcatctgggttcgattctttgtgtccgtcgtaaaaaccagtgattaggtt 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31 gacaaaattggcatctgggttcgattctttgtgtccgtcgtaaaaaccagtgattaggtt 90
Query: 261 ctcgtcttcgagtcggagacaatggatataagcaacgaagcaggcgttgatgcgttctca 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 ctcgtcttcgagtcggagacaatggatataagcaacgaagcaggcgttgatgcgttctca 150
Query: 321 attataggacccacgactataatcggaagaacaattgccgtccggatcttgttctgcaac 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 attataggacccacgactataatcggaagaacaattgccgtccggatcttgttctgcaac 210
Query: 381 tccgtgtctatattcagacacaaagttttcagaattctcaaatttttcctcagaggaggt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tccgtgtctatattcagacacaaagttttcagaattctcaaatttttcctcagaggaggt 270
Query: 441 agggttttactatcaccgtttgtgtccttgctacatcccaggaatccacaagggatatta 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agggttttactatcaccgtttgtgtccttgctacatcccaggaatccacaagggatatta 330
Query: 501 gtaatggtgacgacgatggcctttctgttgaaccgctacacaagcttaaaagcaaaggct 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gtaatggtgacgacgatggcctttctgttgaaccgctacacaagcttaaaagcaaaggct 390
Query: 561 gagatggcttacaggagaaaattttggaggaacatgatgagagctgcattgacatatgag 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gagatggcttacaggagaaaattttggaggaacatgatgagagctgcattgacatatgag 450
Query: 621 gaatggtctcacgccgcaaagatgctagataaagagactcccaaggtgaacgagacagat 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gaatggtctcacgccgcaaagatgctagataaagagactcccaaggtgaacgagacagat 510
Query: 681 ctttttgatgtggagctcgtaagtaataagcttgatgaacttaagcatagacgtcatgag 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ctttttgatgtggagctcgtaagtaataagcttgatgaacttaagcatagacgtcatgag 570
Query: 741 ggctctcttagagacattattttctgtatgagagctgatcttatgagaaatctcggtaac 800
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 571 ggctctcttagagacattattttctgtatgagagctgatcttgtgagaaatctcggtaat 630
Query: 801 atgtgtaaccctgagcttcacaagggaaggcttcacgtgccgagactcatcaaagagtat 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 atgtgtaaccctgagcttcacaagggaaggcttcacgtgccgagactcatcaaagagtat 690
Query: 861 atcgatgaggtctctacacagcttaggatggtttgcgacatggacactgaagagctttct 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 atcgatgaggtctctacacagcttaggatggtttgcgacatggacactgaagagctttct 750
Query: 921 ctggaggagaaactttcttttatgcatgagaccagacacgcgtatggaagaacagctcta 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ctggaggagaaactttcttttatgcatgagaccagacacgcgtatggaagaacagctcta 810
Query: 981 cttctcagtggaggagcttctcttgggggctttccatct 1019
|||||||||||||||||||||||| ||||||||||||||
Sbjct: 811 cttctcagtggaggagcttctctt-ggggctttccatct 848
Score = 61.9 bits (31), Expect = 1e-08
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 90 gctgtctcatctttctcaatttcattcctcg 120
|||||||||||||||||||||||||||||||
Sbjct: 1 gctgtctcatctttctcaatttcattcctcg 31
>At5g04040.1 68418.m00384 patatin-related contains Patatin domain PF01734
Length = 2911
Score = 97.6 bits (49), Expect = 2e-19
Identities = 169/209 (80%)
Strand = Plus / Plus
Query: 741 ggctctcttagagacattattttctgtatgagagctgatcttatgagaaatctcggtaac 800
||||| |||||||||||||| || ||||||||||||||| | |||| |||||||||||
Sbjct: 714 ggctcacttagagacattatgttttgtatgagagctgatttggtgaggaatctcggtaat 773
Query: 801 atgtgtaaccctgagcttcacaagggaaggcttcacgtgccgagactcatcaaagagtat 860
|||||||| | |||||||| || || || ||||| || || |||| |||||||||||
Sbjct: 774 atgtgtaattcggagcttcataaaggtagacttcaggttcctagacatatcaaagagtac 833
Query: 861 atcgatgaggtctctacacagcttaggatggtttgcgacatggacactgaagagctttct 920
|| |||||||| ||||| ||| | || |||||||| || || | || |||||||||
Sbjct: 834 attgatgaggtgtctactcagttgagaatggtttgtaactctgattcagaggagctttct 893
Query: 921 ctggaggagaaactttcttttatgcatga 949
| || ||||| |||||||||||||||||
Sbjct: 894 ttagaagagaagctttcttttatgcatga 922
Score = 56.0 bits (28), Expect = 6e-07
Identities = 79/96 (82%)
Strand = Plus / Plus
Query: 554 aaaggctgagatggcttacaggagaaaattttggaggaacatgatgagagctgcattgac 613
|||||| || ||||||||| |||| || ||||||||||| |||||| | | || |||||
Sbjct: 527 aaaggcggaaatggcttaccggaggaagttttggaggaatatgatgcggacggctttgac 586
Query: 614 atatgaggaatggtctcacgccgcaaagatgctaga 649
|||||||||||| |||| || || |||||| ||||
Sbjct: 587 ttatgaggaatgggctcatgctgctaagatgttaga 622
>At2g39200.1 68415.m04815 seven transmembrane MLO family protein / MLO-like
protein 12 (MLO12) identical to SP|O80961 MLO-like
protein 12 (AtMlo12) {Arabidopsis thaliana}, membrane
protein Mlo12 [Arabidopsis thaliana]
gi|14091594|gb|AAK53805; similar to MLO protein
SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
vulgare][Barley]
Length = 1843
Score = 38.2 bits (19), Expect = 0.14
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 134 atctccttctcttctctaa 152
|||||||||||||||||||
Sbjct: 1698 atctccttctcttctctaa 1680
>At5g09850.1 68418.m01139 transcription elongation factor-related low similarity
to SP|P10712 Transcription elongation factor S-II
(Transcription elongation factor A) {Mus musculus}
Length = 1967
Score = 36.2 bits (18), Expect = 0.56
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 94 tctcatctttctcaattt 111
||||||||||||||||||
Sbjct: 1746 tctcatctttctcaattt 1729
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,834
Number of Sequences: 29161
Number of extensions: 33834
Number of successful extensions: 838
Number of sequences better than 10.0: 65
length of query: 1019
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1001
effective length of database: 43,533,334
effective search space: 43576867334
effective search space used: 43576867334
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)