BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BX834653.r
         (1077 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29880.1  68417.m04252 leucine-rich repeat family protein...  1875   0.0  
At2g19340.1  68415.m06034 membrane protein, putative contain...   216   3e-55
At2g19330.1  68415.m02255 leucine-rich repeat family protein...   216   3e-55
At4g26050.1  68417.m03750 leucine-rich repeat family protein...    62   1e-08
At3g57340.2  68416.m06383 DNAJ heat shock N-terminal domain-...    42   0.010
>At4g29880.1 68417.m04252 leucine-rich repeat family protein contains leucine rich
            repeats, Pfam:PF00560
          Length = 1215

 Score = 1875 bits (946), Expect = 0.0
 Identities = 949/950 (99%)
 Strand = Plus / Plus

                                                                        
Query: 91   agaaaataccagaatctctaacagcaagattactcaacttgatagcattggatattcact 150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266  agaaaataccagaatctctaacagcaagattactcaacttgatagcattggatattcact 325

                                                                        
Query: 151  caaaccagatcaaagctcttccaaactccattggttgtctttctaagctcaagatcctta 210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326  caaaccagatcaaagctcttccaaactccattggttgtctttctaagctcaagatcctta 385

                                                                        
Query: 211  atgtctccggcaactttctcgtttccctcccccaaactattcaaaattgcaggtttcaca 270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386  atgtctccggcaactttctcgtttccctcccccaaactattcaaaattgcaggtttcaca 445

                                                                        
Query: 271  cctcaaccaaatctggaccaaaccaatcatatatgatgataatgctgataaattcctctg 330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446  cctcaaccaaatctggaccaaaccaatcatatatgatgataatgctgataaattcctctg 505

                                                                        
Query: 331  ttttcttttgttttggattttccaggtcactcgaagaactaaacgccaacttcaacgagc 390
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506  ttttcttttgttttggattttccaggtcactcgaagaactaaacgccaacttcaacgagc 565

                                                                        
Query: 391  tgattagattaccagacaacataggcttagaactaaccaatctgaaaaagctctgtgtca 450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566  tgattagattaccagacaacataggcttagaactaaccaatctgaaaaagctctgtgtca 625

                                                                        
Query: 451  actcaaacaagctcattagcctaccagccaccatcacctgcctcacttccctgcgtgtcc 510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626  actcaaacaagctcattagcctaccagccaccatcacctgcctcacttccctgcgtgtcc 685

                                                                        
Query: 511  tcgatgctcgtctcaattgccttatgatcctccctgaggacctcgagaacctcatcaacc 570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686  tcgatgctcgtctcaattgccttatgatcctccctgaggacctcgagaacctcatcaacc 745

                                                                        
Query: 571  tcgaaatcctcaatgtcagtcagaacttccagtatctttctgctcttccatcttctatcg 630
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746  tcgaaatcctcaatgtcagtcagaacttccagtatctttctgctcttccatcttctatcg 805

                                                                        
Query: 631  gtcttctcctgaacctcctcgaactggatattagctacaacaagataacagtgttgcctg 690
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806  gtcttctcctgaacctcctcgaactggatattagctacaacaagataacagtgttgcctg 865

                                                                        
Query: 691  agtctattggatgcatgaggcgcctacgaaaactgagcgcggaaggaaacccactcgtct 750
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866  agtctattggatgcatgaggcgcctacgaaaactgagcgcggaaggaaacccactcgtct 925

                                                                        
Query: 751  ccccacccattgaggttgtggaacagagcttgcatgcggtgcgagagtatctgagccaaa 810
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926  ccccacccattgaggttgtggaacagagcttgcatgcggtgcgagagtatctgagccaaa 985

                                                                        
Query: 811  agatgaatggtaaactggtgaacaccgcagcaaagaagaagacatggggtttccgtaaac 870
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986  agatgaatggtaaactggtgaacaccgcagcaaagaagaagacatggggtttccgtaaac 1045

                                                                        
Query: 871  tagtcaagtacgggacattcaatggcagatcaagggtttggaccagggaagagcgagaag 930
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 tagtcaagtacgggacattcaatggcagatcaagggtttggaccagggaagagcgagaag 1105

                                                                        
Query: 931  ggctcatcatgcctgagtaccgtcccattgatatcctaacttccaccaagtttcctgtta 990
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1106 ggctcatcatgcctgagtaccgtcccattgatatcctaacttccaccaagtttcctgtga 1165

                                                              
Query: 991  cgtgctcacctcgacgtctcttctccccaagaacctatttcagcagataa 1040
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 cgtgctcacctcgacgtctcttctccccaagaacctatttcagcagataa 1215
>At2g19340.1 68415.m06034 membrane protein, putative contains 3 transmembrane
            domains;
          Length = 1164

 Score =  216 bits (109), Expect = 3e-55
 Identities = 379/469 (80%)
 Strand = Plus / Minus

                                                                        
Query: 353  caggtcactcgaagaactaaacgccaacttcaacgagctgattagattaccagacaacat 412
            ||||||| | ||||||||||| || ||||||||| | || || ||||||||||||  |||
Sbjct: 1164 caggtcattggaagaactaaatgcaaacttcaacaaactaatcagattaccagactccat 1105

                                                                        
Query: 413  aggcttagaactaaccaatctgaaaaagctctgtgtcaactcaaacaagctcattagcct 472
             || || ||||| |||||||| |  ||||||| | ||||||| |||||||| ||||| ||
Sbjct: 1104 tggttttgaactcaccaatctaaggaagctctctatcaactccaacaagctaattagtct 1045

                                                                        
Query: 473  accagccaccatcacctgcctcacttccctgcgtgtcctcgatgctcgtctcaattgcct 532
             |||  | |||| ||   |||||| || || |||||||| || || |||||||| |||||
Sbjct: 1044 tccaatctccattactcacctcacatctctccgtgtccttgacgcccgtctcaactgcct 985

                                                                        
Query: 533  tatgatcctccctgaggacctcgagaacctcatcaacctcgaaatcctcaatgtcagtca 592
             ||||| || || || || |||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 984  catgattctaccggatgatctcgagaatctcatcaacctcgagatcctcaatgtcagcca 925

                                                                        
Query: 593  gaacttccagtatctttctgctcttccatcttctatcggtcttctcctgaacctcctcga 652
            ||| |||||||||||||| |||||||||||||| || || ||| |  |||||||| | ||
Sbjct: 924  gaatttccagtatctttccgctcttccatcttccattggccttttaatgaacctcattga 865

                                                                        
Query: 653  actggatattagctacaacaagataacagtgttgcctgagtctattggatgcatgaggcg 712
             || ||| |||||||||||||||| || || ||||| ||||| ||||| |||||||| ||
Sbjct: 864  gctcgatgttagctacaacaagatcactgtcttgccagagtccattggctgcatgagacg 805

                                                                        
Query: 713  cctacgaaaactgagcgcggaaggaaacccactcgtctccccacccattgaggttgtgga 772
              || | || ||||| |  ||||||||||| || || || |||||||| |||||  ||||
Sbjct: 804  gttaaggaagctgagtgttgaaggaaacccgcttgtgtcgccacccatagaggtgatgga 745

                                                             
Query: 773  acagagcttgcatgcggtgcgagagtatctgagccaaaagatgaatggt 821
             ||||  ||||| | |||| ||||||||||||  || ||||||||||||
Sbjct: 744  gcagaatttgcaggtggtgagagagtatctgacacagaagatgaatggt 696

 Score = 61.9 bits (31), Expect = 1e-08
 Identities = 88/107 (82%)
 Strand = Plus / Minus

                                                                       
Query: 846 aagaagacatggggtttccgtaaactagtcaagtacgggacattcaatggcagatcaagg 905
           |||||| ||||||| ||| ||||| | || ||||| ||||| ||||||||| ||||||| 
Sbjct: 671 aagaagtcatggggattcggtaaattggtgaagtatgggacgttcaatggcggatcaaga 612

                                                          
Query: 906 gtttggaccagggaagagcgagaagggctcatcatgcctgagtaccg 952
              ||||  || || ||| |||||||| |||||||||||||||||||
Sbjct: 611 agctggaatagagaggagagagaagggttcatcatgcctgagtaccg 565
>At2g19330.1 68415.m02255 leucine-rich repeat family protein contains leucine
           rich repeats, Pfam:PF00560
          Length = 1143

 Score =  216 bits (109), Expect = 3e-55
 Identities = 379/469 (80%)
 Strand = Plus / Plus

                                                                       
Query: 353 caggtcactcgaagaactaaacgccaacttcaacgagctgattagattaccagacaacat 412
           ||||||| | ||||||||||| || ||||||||| | || || ||||||||||||  |||
Sbjct: 456 caggtcattggaagaactaaatgcaaacttcaacaaactaatcagattaccagactccat 515

                                                                       
Query: 413 aggcttagaactaaccaatctgaaaaagctctgtgtcaactcaaacaagctcattagcct 472
            || || ||||| |||||||| |  ||||||| | ||||||| |||||||| ||||| ||
Sbjct: 516 tggttttgaactcaccaatctaaggaagctctctatcaactccaacaagctaattagtct 575

                                                                       
Query: 473 accagccaccatcacctgcctcacttccctgcgtgtcctcgatgctcgtctcaattgcct 532
            |||  | |||| ||   |||||| || || |||||||| || || |||||||| |||||
Sbjct: 576 tccaatctccattactcacctcacatctctccgtgtccttgacgcccgtctcaactgcct 635

                                                                       
Query: 533 tatgatcctccctgaggacctcgagaacctcatcaacctcgaaatcctcaatgtcagtca 592
            ||||| || || || || |||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 636 catgattctaccggatgatctcgagaatctcatcaacctcgagatcctcaatgtcagcca 695

                                                                       
Query: 593 gaacttccagtatctttctgctcttccatcttctatcggtcttctcctgaacctcctcga 652
           ||| |||||||||||||| |||||||||||||| || || ||| |  |||||||| | ||
Sbjct: 696 gaatttccagtatctttccgctcttccatcttccattggccttttaatgaacctcattga 755

                                                                       
Query: 653 actggatattagctacaacaagataacagtgttgcctgagtctattggatgcatgaggcg 712
            || ||| |||||||||||||||| || || ||||| ||||| ||||| |||||||| ||
Sbjct: 756 gctcgatgttagctacaacaagatcactgtcttgccagagtccattggctgcatgagacg 815

                                                                       
Query: 713 cctacgaaaactgagcgcggaaggaaacccactcgtctccccacccattgaggttgtgga 772
             || | || ||||| |  ||||||||||| || || || |||||||| |||||  ||||
Sbjct: 816 gttaaggaagctgagtgttgaaggaaacccgcttgtgtcgccacccatagaggtgatgga 875

                                                            
Query: 773 acagagcttgcatgcggtgcgagagtatctgagccaaaagatgaatggt 821
            ||||  ||||| | |||| ||||||||||||  || ||||||||||||
Sbjct: 876 gcagaatttgcaggtggtgagagagtatctgacacagaagatgaatggt 924

 Score =  192 bits (97), Expect = 4e-48
 Identities = 151/169 (89%)
 Strand = Plus / Plus

                                                                       
Query: 96  ataccagaatctctaacagcaagattactcaacttgatagcattggatattcactcaaac 155
           ||||||||||| |||||||| ||| ||||||||||||||||||| ||| |||||||||| 
Sbjct: 292 ataccagaatcactaacagcgagactactcaacttgatagcattagatgttcactcaaat 351

                                                                       
Query: 156 cagatcaaagctcttccaaactccattggttgtctttctaagctcaagatccttaatgtc 215
           ||||||||||||||||||||||||||||||||||| |||||||||||||  || ||||||
Sbjct: 352 cagatcaaagctcttccaaactccattggttgtctctctaagctcaagactctcaatgtc 411

                                                            
Query: 216 tccggcaactttctcgtttccctcccccaaactattcaaaattgcaggt 264
           |||||||||||||| || ||| | ||| || |||| ||| |||||||||
Sbjct: 412 tccggcaactttcttgtatcctttcccaaatctatccaacattgcaggt 460

 Score = 61.9 bits (31), Expect = 1e-08
 Identities = 88/107 (82%)
 Strand = Plus / Plus

                                                                        
Query: 846  aagaagacatggggtttccgtaaactagtcaagtacgggacattcaatggcagatcaagg 905
            |||||| ||||||| ||| ||||| | || ||||| ||||| ||||||||| ||||||| 
Sbjct: 949  aagaagtcatggggattcggtaaattggtgaagtatgggacgttcaatggcggatcaaga 1008

                                                           
Query: 906  gtttggaccagggaagagcgagaagggctcatcatgcctgagtaccg 952
               ||||  || || ||| |||||||| |||||||||||||||||||
Sbjct: 1009 agctggaatagagaggagagagaagggttcatcatgcctgagtaccg 1055

 Score = 56.0 bits (28), Expect = 6e-07
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 1005 cgtctcttctccccaagaacctatttcagcagataa 1040
            |||||||| || ||||||||||||||||||||||||
Sbjct: 1108 cgtctcttttctccaagaacctatttcagcagataa 1143
>At4g26050.1 68417.m03750 leucine-rich repeat family protein contains Pfam
           PF00560: Leucine Rich Repeat domains;
          Length = 1500

 Score = 61.9 bits (31), Expect = 1e-08
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                  
Query: 166 ctcttccaaactccattggttgtctttctaagctcaagatccttaatgtctccgg 220
           ||||||||||||||||||| |||||||| || || ||| | ||||||||||||||
Sbjct: 416 ctcttccaaactccattggatgtctttccaaacttaagtttcttaatgtctccgg 470

 Score = 50.1 bits (25), Expect = 4e-05
 Identities = 82/101 (81%)
 Strand = Plus / Plus

                                                                       
Query: 363 gaagaactaaacgccaacttcaacgagctgattagattaccagacaacataggcttagaa 422
           ||||| || |||||||||||||||||||| |  ||  | ||||||   ||||| || || 
Sbjct: 520 gaagagctgaacgccaacttcaacgagcttacaaggctcccagacgcgatagggtttgag 579

                                                    
Query: 423 ctaaccaatctgaaaaagctctgtgtcaactcaaacaagct 463
           ||||| |||||||  |||||||  |||||||||||||||||
Sbjct: 580 ctaacgaatctgacgaagctctccgtcaactcaaacaagct 620

 Score = 40.1 bits (20), Expect = 0.038
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                       
Query: 539 cctccctgaggacctcgagaacctcatcaacctcgaaatcctcaatgtcagtcagaactt 598
           |||||||||||| || ||||||||| | |||||  |  ||||||| || || ||||||||
Sbjct: 696 cctccctgaggatcttgagaacctcgtgaaccttcaggtcctcaacgttagccagaactt 755

               
Query: 599 ccag 602
           ||||
Sbjct: 756 ccag 759
>At3g57340.2 68416.m06383 DNAJ heat shock N-terminal domain-containing protein
            similar to SP|Q9QYI4 DnaJ homolog subfamily B member 12
            Mus musculus; contains Pfam profile PF00226 DnaJ domain
          Length = 1478

 Score = 42.1 bits (21), Expect = 0.010
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 329  tgttttcttttgttttggatt 349
            |||||||||||||||||||||
Sbjct: 1380 tgttttcttttgttttggatt 1400
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 35,634
Number of Sequences: 29161
Number of extensions: 35634
Number of successful extensions: 946
Number of sequences better than 10.0: 85
length of query: 1077
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1059
effective length of database: 43,533,334
effective search space: 46101800706
effective search space used: 46101800706
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)