BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BX834653.r
(1077 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g29880.1 68417.m04252 leucine-rich repeat family protein... 1875 0.0
At2g19340.1 68415.m06034 membrane protein, putative contain... 216 3e-55
At2g19330.1 68415.m02255 leucine-rich repeat family protein... 216 3e-55
At4g26050.1 68417.m03750 leucine-rich repeat family protein... 62 1e-08
At3g57340.2 68416.m06383 DNAJ heat shock N-terminal domain-... 42 0.010
>At4g29880.1 68417.m04252 leucine-rich repeat family protein contains leucine rich
repeats, Pfam:PF00560
Length = 1215
Score = 1875 bits (946), Expect = 0.0
Identities = 949/950 (99%)
Strand = Plus / Plus
Query: 91 agaaaataccagaatctctaacagcaagattactcaacttgatagcattggatattcact 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agaaaataccagaatctctaacagcaagattactcaacttgatagcattggatattcact 325
Query: 151 caaaccagatcaaagctcttccaaactccattggttgtctttctaagctcaagatcctta 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caaaccagatcaaagctcttccaaactccattggttgtctttctaagctcaagatcctta 385
Query: 211 atgtctccggcaactttctcgtttccctcccccaaactattcaaaattgcaggtttcaca 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atgtctccggcaactttctcgtttccctcccccaaactattcaaaattgcaggtttcaca 445
Query: 271 cctcaaccaaatctggaccaaaccaatcatatatgatgataatgctgataaattcctctg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cctcaaccaaatctggaccaaaccaatcatatatgatgataatgctgataaattcctctg 505
Query: 331 ttttcttttgttttggattttccaggtcactcgaagaactaaacgccaacttcaacgagc 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttttcttttgttttggattttccaggtcactcgaagaactaaacgccaacttcaacgagc 565
Query: 391 tgattagattaccagacaacataggcttagaactaaccaatctgaaaaagctctgtgtca 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgattagattaccagacaacataggcttagaactaaccaatctgaaaaagctctgtgtca 625
Query: 451 actcaaacaagctcattagcctaccagccaccatcacctgcctcacttccctgcgtgtcc 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 actcaaacaagctcattagcctaccagccaccatcacctgcctcacttccctgcgtgtcc 685
Query: 511 tcgatgctcgtctcaattgccttatgatcctccctgaggacctcgagaacctcatcaacc 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcgatgctcgtctcaattgccttatgatcctccctgaggacctcgagaacctcatcaacc 745
Query: 571 tcgaaatcctcaatgtcagtcagaacttccagtatctttctgctcttccatcttctatcg 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tcgaaatcctcaatgtcagtcagaacttccagtatctttctgctcttccatcttctatcg 805
Query: 631 gtcttctcctgaacctcctcgaactggatattagctacaacaagataacagtgttgcctg 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gtcttctcctgaacctcctcgaactggatattagctacaacaagataacagtgttgcctg 865
Query: 691 agtctattggatgcatgaggcgcctacgaaaactgagcgcggaaggaaacccactcgtct 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 agtctattggatgcatgaggcgcctacgaaaactgagcgcggaaggaaacccactcgtct 925
Query: 751 ccccacccattgaggttgtggaacagagcttgcatgcggtgcgagagtatctgagccaaa 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 ccccacccattgaggttgtggaacagagcttgcatgcggtgcgagagtatctgagccaaa 985
Query: 811 agatgaatggtaaactggtgaacaccgcagcaaagaagaagacatggggtttccgtaaac 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 agatgaatggtaaactggtgaacaccgcagcaaagaagaagacatggggtttccgtaaac 1045
Query: 871 tagtcaagtacgggacattcaatggcagatcaagggtttggaccagggaagagcgagaag 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 tagtcaagtacgggacattcaatggcagatcaagggtttggaccagggaagagcgagaag 1105
Query: 931 ggctcatcatgcctgagtaccgtcccattgatatcctaacttccaccaagtttcctgtta 990
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1106 ggctcatcatgcctgagtaccgtcccattgatatcctaacttccaccaagtttcctgtga 1165
Query: 991 cgtgctcacctcgacgtctcttctccccaagaacctatttcagcagataa 1040
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 cgtgctcacctcgacgtctcttctccccaagaacctatttcagcagataa 1215
>At2g19340.1 68415.m06034 membrane protein, putative contains 3 transmembrane
domains;
Length = 1164
Score = 216 bits (109), Expect = 3e-55
Identities = 379/469 (80%)
Strand = Plus / Minus
Query: 353 caggtcactcgaagaactaaacgccaacttcaacgagctgattagattaccagacaacat 412
||||||| | ||||||||||| || ||||||||| | || || |||||||||||| |||
Sbjct: 1164 caggtcattggaagaactaaatgcaaacttcaacaaactaatcagattaccagactccat 1105
Query: 413 aggcttagaactaaccaatctgaaaaagctctgtgtcaactcaaacaagctcattagcct 472
|| || ||||| |||||||| | ||||||| | ||||||| |||||||| ||||| ||
Sbjct: 1104 tggttttgaactcaccaatctaaggaagctctctatcaactccaacaagctaattagtct 1045
Query: 473 accagccaccatcacctgcctcacttccctgcgtgtcctcgatgctcgtctcaattgcct 532
||| | |||| || |||||| || || |||||||| || || |||||||| |||||
Sbjct: 1044 tccaatctccattactcacctcacatctctccgtgtccttgacgcccgtctcaactgcct 985
Query: 533 tatgatcctccctgaggacctcgagaacctcatcaacctcgaaatcctcaatgtcagtca 592
||||| || || || || |||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 984 catgattctaccggatgatctcgagaatctcatcaacctcgagatcctcaatgtcagcca 925
Query: 593 gaacttccagtatctttctgctcttccatcttctatcggtcttctcctgaacctcctcga 652
||| |||||||||||||| |||||||||||||| || || ||| | |||||||| | ||
Sbjct: 924 gaatttccagtatctttccgctcttccatcttccattggccttttaatgaacctcattga 865
Query: 653 actggatattagctacaacaagataacagtgttgcctgagtctattggatgcatgaggcg 712
|| ||| |||||||||||||||| || || ||||| ||||| ||||| |||||||| ||
Sbjct: 864 gctcgatgttagctacaacaagatcactgtcttgccagagtccattggctgcatgagacg 805
Query: 713 cctacgaaaactgagcgcggaaggaaacccactcgtctccccacccattgaggttgtgga 772
|| | || ||||| | ||||||||||| || || || |||||||| ||||| ||||
Sbjct: 804 gttaaggaagctgagtgttgaaggaaacccgcttgtgtcgccacccatagaggtgatgga 745
Query: 773 acagagcttgcatgcggtgcgagagtatctgagccaaaagatgaatggt 821
|||| ||||| | |||| |||||||||||| || ||||||||||||
Sbjct: 744 gcagaatttgcaggtggtgagagagtatctgacacagaagatgaatggt 696
Score = 61.9 bits (31), Expect = 1e-08
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 846 aagaagacatggggtttccgtaaactagtcaagtacgggacattcaatggcagatcaagg 905
|||||| ||||||| ||| ||||| | || ||||| ||||| ||||||||| |||||||
Sbjct: 671 aagaagtcatggggattcggtaaattggtgaagtatgggacgttcaatggcggatcaaga 612
Query: 906 gtttggaccagggaagagcgagaagggctcatcatgcctgagtaccg 952
|||| || || ||| |||||||| |||||||||||||||||||
Sbjct: 611 agctggaatagagaggagagagaagggttcatcatgcctgagtaccg 565
>At2g19330.1 68415.m02255 leucine-rich repeat family protein contains leucine
rich repeats, Pfam:PF00560
Length = 1143
Score = 216 bits (109), Expect = 3e-55
Identities = 379/469 (80%)
Strand = Plus / Plus
Query: 353 caggtcactcgaagaactaaacgccaacttcaacgagctgattagattaccagacaacat 412
||||||| | ||||||||||| || ||||||||| | || || |||||||||||| |||
Sbjct: 456 caggtcattggaagaactaaatgcaaacttcaacaaactaatcagattaccagactccat 515
Query: 413 aggcttagaactaaccaatctgaaaaagctctgtgtcaactcaaacaagctcattagcct 472
|| || ||||| |||||||| | ||||||| | ||||||| |||||||| ||||| ||
Sbjct: 516 tggttttgaactcaccaatctaaggaagctctctatcaactccaacaagctaattagtct 575
Query: 473 accagccaccatcacctgcctcacttccctgcgtgtcctcgatgctcgtctcaattgcct 532
||| | |||| || |||||| || || |||||||| || || |||||||| |||||
Sbjct: 576 tccaatctccattactcacctcacatctctccgtgtccttgacgcccgtctcaactgcct 635
Query: 533 tatgatcctccctgaggacctcgagaacctcatcaacctcgaaatcctcaatgtcagtca 592
||||| || || || || |||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 636 catgattctaccggatgatctcgagaatctcatcaacctcgagatcctcaatgtcagcca 695
Query: 593 gaacttccagtatctttctgctcttccatcttctatcggtcttctcctgaacctcctcga 652
||| |||||||||||||| |||||||||||||| || || ||| | |||||||| | ||
Sbjct: 696 gaatttccagtatctttccgctcttccatcttccattggccttttaatgaacctcattga 755
Query: 653 actggatattagctacaacaagataacagtgttgcctgagtctattggatgcatgaggcg 712
|| ||| |||||||||||||||| || || ||||| ||||| ||||| |||||||| ||
Sbjct: 756 gctcgatgttagctacaacaagatcactgtcttgccagagtccattggctgcatgagacg 815
Query: 713 cctacgaaaactgagcgcggaaggaaacccactcgtctccccacccattgaggttgtgga 772
|| | || ||||| | ||||||||||| || || || |||||||| ||||| ||||
Sbjct: 816 gttaaggaagctgagtgttgaaggaaacccgcttgtgtcgccacccatagaggtgatgga 875
Query: 773 acagagcttgcatgcggtgcgagagtatctgagccaaaagatgaatggt 821
|||| ||||| | |||| |||||||||||| || ||||||||||||
Sbjct: 876 gcagaatttgcaggtggtgagagagtatctgacacagaagatgaatggt 924
Score = 192 bits (97), Expect = 4e-48
Identities = 151/169 (89%)
Strand = Plus / Plus
Query: 96 ataccagaatctctaacagcaagattactcaacttgatagcattggatattcactcaaac 155
||||||||||| |||||||| ||| ||||||||||||||||||| ||| ||||||||||
Sbjct: 292 ataccagaatcactaacagcgagactactcaacttgatagcattagatgttcactcaaat 351
Query: 156 cagatcaaagctcttccaaactccattggttgtctttctaagctcaagatccttaatgtc 215
||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct: 352 cagatcaaagctcttccaaactccattggttgtctctctaagctcaagactctcaatgtc 411
Query: 216 tccggcaactttctcgtttccctcccccaaactattcaaaattgcaggt 264
|||||||||||||| || ||| | ||| || |||| ||| |||||||||
Sbjct: 412 tccggcaactttcttgtatcctttcccaaatctatccaacattgcaggt 460
Score = 61.9 bits (31), Expect = 1e-08
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 846 aagaagacatggggtttccgtaaactagtcaagtacgggacattcaatggcagatcaagg 905
|||||| ||||||| ||| ||||| | || ||||| ||||| ||||||||| |||||||
Sbjct: 949 aagaagtcatggggattcggtaaattggtgaagtatgggacgttcaatggcggatcaaga 1008
Query: 906 gtttggaccagggaagagcgagaagggctcatcatgcctgagtaccg 952
|||| || || ||| |||||||| |||||||||||||||||||
Sbjct: 1009 agctggaatagagaggagagagaagggttcatcatgcctgagtaccg 1055
Score = 56.0 bits (28), Expect = 6e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1005 cgtctcttctccccaagaacctatttcagcagataa 1040
|||||||| || ||||||||||||||||||||||||
Sbjct: 1108 cgtctcttttctccaagaacctatttcagcagataa 1143
>At4g26050.1 68417.m03750 leucine-rich repeat family protein contains Pfam
PF00560: Leucine Rich Repeat domains;
Length = 1500
Score = 61.9 bits (31), Expect = 1e-08
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 166 ctcttccaaactccattggttgtctttctaagctcaagatccttaatgtctccgg 220
||||||||||||||||||| |||||||| || || ||| | ||||||||||||||
Sbjct: 416 ctcttccaaactccattggatgtctttccaaacttaagtttcttaatgtctccgg 470
Score = 50.1 bits (25), Expect = 4e-05
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 363 gaagaactaaacgccaacttcaacgagctgattagattaccagacaacataggcttagaa 422
||||| || |||||||||||||||||||| | || | |||||| ||||| || ||
Sbjct: 520 gaagagctgaacgccaacttcaacgagcttacaaggctcccagacgcgatagggtttgag 579
Query: 423 ctaaccaatctgaaaaagctctgtgtcaactcaaacaagct 463
||||| ||||||| ||||||| |||||||||||||||||
Sbjct: 580 ctaacgaatctgacgaagctctccgtcaactcaaacaagct 620
Score = 40.1 bits (20), Expect = 0.038
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 539 cctccctgaggacctcgagaacctcatcaacctcgaaatcctcaatgtcagtcagaactt 598
|||||||||||| || ||||||||| | ||||| | ||||||| || || ||||||||
Sbjct: 696 cctccctgaggatcttgagaacctcgtgaaccttcaggtcctcaacgttagccagaactt 755
Query: 599 ccag 602
||||
Sbjct: 756 ccag 759
>At3g57340.2 68416.m06383 DNAJ heat shock N-terminal domain-containing protein
similar to SP|Q9QYI4 DnaJ homolog subfamily B member 12
Mus musculus; contains Pfam profile PF00226 DnaJ domain
Length = 1478
Score = 42.1 bits (21), Expect = 0.010
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 329 tgttttcttttgttttggatt 349
|||||||||||||||||||||
Sbjct: 1380 tgttttcttttgttttggatt 1400
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 35,634
Number of Sequences: 29161
Number of extensions: 35634
Number of successful extensions: 946
Number of sequences better than 10.0: 85
length of query: 1077
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1059
effective length of database: 43,533,334
effective search space: 46101800706
effective search space used: 46101800706
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)