BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z48609.r
(386 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20340.1 68415.m02375 tyrosine decarboxylase, putative s... 589 e-168
At5g11490.1 68418.m01341 adaptin family protein similar to ... 34 0.82
At3g56700.1 68416.m06307 male sterility protein, putative s... 34 0.82
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -... 34 0.82
At1g06840.1 68414.m00729 leucine-rich repeat transmembrane ... 34 0.82
>At2g20340.1 68415.m02375 tyrosine decarboxylase, putative similar to
tyrosine/dopa decarboxylase [Papaver somniferum]
GI:3282527, SP|Q06087 Tyrosine decarboxylase 3 (EC
4.1.1.25) {Petroselinum crispum}; contains Pfam profile
PF00282: Pyridoxal-dependent decarboxylase conserved
domain
Length = 1824
Score = 589 bits (297), Expect = e-168
Identities = 354/372 (95%), Gaps = 6/372 (1%)
Strand = Plus / Minus
Query: 11 aacattttattatcattgcttacattaattaaccacaaaataaacccaaaccaaatagat 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1817 aacattttattatcattgcttacattaattaaccacaaaataaacccaaaccaaatagat 1758
Query: 71 aaaatacacacaattggtaaaaaaaaaaa-tagnggntaaaatacacacaaga----tca 125
||||||||||||||||||||||||||||| ||| || |||||||||||||||| |||
Sbjct: 1757 aaaatacacacaattggtaaaaaaaaaaaatagaggataaaatacacacaagaaagatca 1698
Query: 126 ccttactaaagtgtaccgaaatcaaaccgaagttgataagtcttacttaagcaatttcct 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1697 ccttactaaagtgtaccgaaatcaaaccgaagttgataagtcttacttaagcaattttct 1638
Query: 186 gttttattattatattatcaaattaanccaaaccaaaccgaagtgcttcgttttgttggc 245
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1637 gttttattattatattatcaaattaaaccaaaccaaaccgaagtgcttcgttttgttggc 1578
Query: 246 aaaaaccgttttatncttttnctgttttatcatatttccttgtgaagc-agtaagangct 304
|||||||||||||| ||||| |||||||||||||||| |||||||||| ||||||| |||
Sbjct: 1577 aaaaaccgttttattcttttactgttttatcatatttacttgtgaagcaagtaagatgct 1518
Query: 305 tctccctgaataaccttccacggctccttaacgtgcttctcctccgtcaatggcgctcca 364
||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1517 tcttcctgaataatcttccacgcctccttaacgtgcttctcctccgtcaatggcgctcct 1458
Query: 365 attgcgcaacgt 376
||||||||||||
Sbjct: 1457 attgcgcaacgt 1446
>At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9WV76
Adapter-related protein complex 4 beta 1 subunit (Beta
subunit of AP- 4) {Mus musculus}, beta-adaptin Drosophila
1 {Drosophila melanogaster} GI:434902; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 2813
Score = 34.2 bits (17), Expect = 0.82
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 50 ataaacccaaaccaaatagat 70
|||||||||||||||| ||||
Sbjct: 2246 ataaacccaaaccaaagagat 2226
>At3g56700.1 68416.m06307 male sterility protein, putative similar to SP|Q08891
Male sterility protein 2 {Arabidopsis thaliana}; contains
Pfam profile PF03015: Male sterility protein
Length = 1584
Score = 34.2 bits (17), Expect = 0.82
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 180 tttcctgttttattatt 196
|||||||||||||||||
Sbjct: 1312 tttcctgttttattatt 1296
>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related similar to
CLIP-associating protein CLASP2 (GI:13508651) [Rattus
norvegicus]
Length = 4779
Score = 34.2 bits (17), Expect = 0.82
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 84 ttggtaaaaaaaaaaat 100
|||||||||||||||||
Sbjct: 182 ttggtaaaaaaaaaaat 198
>At1g06840.1 68414.m00729 leucine-rich repeat transmembrane protein kinase,
putative similar to receptor protein kinase GB:BAA11869
GI:1389566 from [Arabidopsis thaliana]
Length = 2927
Score = 34.2 bits (17), Expect = 0.82
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 226 aagtgcttcgttttgtt 242
|||||||||||||||||
Sbjct: 509 aagtgcttcgttttgtt 493
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,890
Number of Sequences: 29161
Number of extensions: 14890
Number of successful extensions: 933
Number of sequences better than 10.0: 21
length of query: 386
length of database: 44,058,232
effective HSP length: 17
effective length of query: 369
effective length of database: 43,562,495
effective search space: 16074560655
effective search space used: 16074560655
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)