BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z48550.r
         (265 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03660.1  68418.m00325 expressed protein low similarity t...   456   e-128
At3g10220.1  68416.m01223 tubulin folding cofactor B identic...    40   0.009
At5g11410.1  68418.m01331 protein kinase family protein cont...    36   0.14 
At5g45100.2  68418.m05534 expressed protein                        32   2.2  
At5g18980.1  68418.m02255 expressed protein                        32   2.2  

>At5g03660.1 68418.m00325 expressed protein low similarity to outer surface
           protein F [Borrelia burgdorferi] GI:466482; contains
           Pfam profile PF04949: Family of unknown function
           (DUF662)
          Length = 860

 Score =  456 bits (230), Expect = e-128
 Identities = 251/258 (97%), Gaps = 1/258 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   tgctccggaacaaacatagtttctttacattactattacaattctgccaatcacgtcgat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tgctccggaacaaacatagtttctttacattactattacaattctgccaatcacgtcgat 801

                                                                       
Query: 64  aatgtagtgccatcgtaactttgttacattt-ctttgcaacatctagttcaaacacatat 122
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 800 aatgtagtgccatcgtaactttgttacattttctttgcaacatctagttcaaacacatat 741

                                                                       
Query: 123 ctccttacttttaattttataaatnatatatatnactagaatcataaaagnacaatgaaa 182
           || ||||||||| ||||||||||| |||||||| |||||||||||||||| |||||||||
Sbjct: 740 cttcttactttttattttataaattatatatattactagaatcataaaagaacaatgaaa 681

                                                                       
Query: 183 atactctaaaaagtgactttttnagaactttgaatagccaaatcccagcgactctgctcg 242
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 680 atactctaaaaagtgacttttttagaactttgaatagccaaatcccagcgactctgctcg 621

                             
Query: 243 tccaacactaaggtttgg 260
           ||||||||||||||||||
Sbjct: 620 tccaacactaaggtttgg 603



>At3g10220.1 68416.m01223 tubulin folding cofactor B identical to tubulin
           folding cofactor B GI:20514259 from [Arabidopsis
           thaliana]; identical to cDNA tubulin folding cofactor B
           GI:20514258
          Length = 1443

 Score = 40.1 bits (20), Expect = 0.009
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 226 cccagcgactctgctcgtccaaca 249
           |||| |||||||||||||||||||
Sbjct: 636 cccaacgactctgctcgtccaaca 613



>At5g11410.1 68418.m01331 protein kinase family protein contains eukaryotic
           protein kinase domain, INTERPRO:IPR000719
          Length = 1011

 Score = 36.2 bits (18), Expect = 0.14
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 12  aacaaacatagtttcttt 29
           ||||||||||||||||||
Sbjct: 629 aacaaacatagtttcttt 612



>At5g45100.2 68418.m05534 expressed protein
          Length = 1375

 Score = 32.2 bits (16), Expect = 2.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 83  tttgttacatttcttt 98
           ||||||||||||||||
Sbjct: 304 tttgttacatttcttt 319



>At5g18980.1 68418.m02255 expressed protein
          Length = 2777

 Score = 32.2 bits (16), Expect = 2.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 222  aaatcccagcgactct 237
            ||||||||||||||||
Sbjct: 1430 aaatcccagcgactct 1415



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5504
Number of Sequences: 29161
Number of extensions: 5504
Number of successful extensions: 363
Number of sequences better than 10.0: 31
length of query: 265
length of database: 44,058,232
effective HSP length: 16
effective length of query: 249
effective length of database: 43,591,656
effective search space: 10854322344
effective search space used: 10854322344
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)