BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z48546.r
(236 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36700.1 68417.m05208 cupin family protein low similarit... 446 e-125
At2g33070.1 68415.m04055 jacalin lectin family protein simi... 38 0.031
At5g04040.1 68418.m00384 patatin-related contains Patatin d... 36 0.12
At4g13720.1 68417.m02130 inosine triphosphate pyrophosphata... 36 0.12
At1g13550.1 68414.m01588 expressed protein ; expression su... 36 0.12
>At4g36700.1 68417.m05208 cupin family protein low similarity to preproMP27-MP32
from Cucurbita cv. Kurokawa Amakuri [GI:691752]; contains
Pfam profile PF00190: Cupin
Length = 1842
Score = 446 bits (225), Expect = e-125
Identities = 233/236 (98%)
Strand = Plus / Minus
Query: 1 tttaaacaaaacaaaacattatacaaacacaatacaactttaaacatggcaacaacaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1800 tttaaacaaaacaaaacattatacaaacacaatacaactttaaacatggcaacaacaaaa 1741
Query: 61 acaatgcaaaagtacattaacaaataaacaagactatggaaaaaaaaagttacaagagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1740 acaatgcaaaagtacattaacaaataaacaagactatggaaaaaaaaagttacaagagag 1681
Query: 121 gtcagaaccaaagtcctaaccactaacaacaaaccaaacacactcttgangtacgtgggc 180
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 1680 gtcagaaccaaagttctaaccactaacaacaaaccaaacacactcttgacgtacgttggc 1621
Query: 181 cttctcttttactcctccggcttaactctcctcttcaccttccatttcccattctt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1620 cttctcttttactcctccggcttaactctcctcttcaccttccatttcccattctt 1565
>At2g33070.1 68415.m04055 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767, epithiospecifier [Arabidopsis
thaliana] GI:16118845; contains Pfam profiles PF01419
jacalin-like lectin family, PF01344 Kelch motif
Length = 1716
Score = 38.2 bits (19), Expect = 0.031
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 10 aacaaaacattatacaaac 28
|||||||||||||||||||
Sbjct: 103 aacaaaacattatacaaac 85
>At5g04040.1 68418.m00384 patatin-related contains Patatin domain PF01734
Length = 2911
Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 126 aaccaaagtcctaaccac 143
||||||||||||||||||
Sbjct: 1013 aaccaaagtcctaaccac 996
>At4g13720.1 68417.m02130 inosine triphosphate pyrophosphatase, putative / HAM1
family protein contains Pfam profile PF01725: Ham1
family; similar to inosine triphosphate pyrophosphatase
(GI:13398328) [Homo sapiens]
Length = 817
Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 98 ggaaaaaaaaagttacaa 115
||||||||||||||||||
Sbjct: 755 ggaaaaaaaaagttacaa 738
>At1g13550.1 68414.m01588 expressed protein ; expression supported by MPSS
Length = 1185
Score = 36.2 bits (18), Expect = 0.12
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 204 aactctcctcttcaccttccat 225
||||||||||||||| ||||||
Sbjct: 991 aactctcctcttcactttccat 970
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,367
Number of Sequences: 29161
Number of extensions: 12367
Number of successful extensions: 1278
Number of sequences better than 10.0: 167
length of query: 236
length of database: 44,058,232
effective HSP length: 16
effective length of query: 220
effective length of database: 43,591,656
effective search space: 9590164320
effective search space used: 9590164320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)