BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z48465.r
(200 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g42980.1 68418.m05242 thioredoxin H-type 3 (TRX-H-3) (GI... 383 e-106
At2g45260.1 68415.m05634 expressed protein contains Pfam pr... 34 0.41
At1g11540.1 68414.m01325 expressed protein contains Pfam p... 34 0.41
At5g01620.1 68418.m00077 expressed protein several hypothet... 32 1.6
At4g09760.3 68417.m01604 choline kinase, putative similar t... 32 1.6
>At5g42980.1 68418.m05242 thioredoxin H-type 3 (TRX-H-3) (GIF1) identical to
SP|Q42403 Thioredoxin H-type 3 (TRX-H-3) {Arabidopsis
thaliana}; identical to cDNA (GIF1) mRNA for thioredoxin
GI:992961
Length = 686
Score = 383 bits (193), Expect = e-106
Identities = 193/193 (100%)
Strand = Plus / Minus
Query: 8 taacaatagaatccccaaagagtaaacataaccatgaacgaacaattagcatagctgcga 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 taacaatagaatccccaaagagtaaacataaccatgaacgaacaattagcatagctgcga 627
Query: 68 gtaatcaagtttgcaacaacatttattcaccaccacacataagagcacatttaaggtgaa 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtaatcaagtttgcaacaacatttattcaccaccacacataagagcacatttaaggtgaa 567
Query: 128 aagactcgggcgaacaaaggatttattaaaacaccaaacatattttagcaaaataggtaa 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aagactcgggcgaacaaaggatttattaaaacaccaaacatattttagcaaaataggtaa 507
Query: 188 gagagaaaagcaa 200
|||||||||||||
Sbjct: 506 gagagaaaagcaa 494
>At2g45260.1 68415.m05634 expressed protein contains Pfam profile PF04859: Plant
protein of unknown function (DUF641
Length = 1608
Score = 34.2 bits (17), Expect = 0.41
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1 ttttttttaacaataga 17
|||||||||||||||||
Sbjct: 1582 ttttttttaacaataga 1566
>At1g11540.1 68414.m01325 expressed protein contains Pfam profile: PF01925 domain
of unknown function DUF81
Length = 1602
Score = 34.2 bits (17), Expect = 0.41
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 31 aaacataaccatgaacgaaca 51
||||| |||||||||||||||
Sbjct: 1013 aaacaaaaccatgaacgaaca 993
>At5g01620.1 68418.m00077 expressed protein several hypothetical proteins -
Arabidopsis thaliana
Length = 1648
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 143 aaaggatttattaaaa 158
||||||||||||||||
Sbjct: 10 aaaggatttattaaaa 25
>At4g09760.3 68417.m01604 choline kinase, putative similar to GmCK2p choline
kinase gi|1438881|gb|AAC49375
Length = 1554
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 23 caaagagtaaacataa 38
||||||||||||||||
Sbjct: 1393 caaagagtaaacataa 1378
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6005
Number of Sequences: 29161
Number of extensions: 6005
Number of successful extensions: 453
Number of sequences better than 10.0: 27
length of query: 200
length of database: 44,058,232
effective HSP length: 16
effective length of query: 184
effective length of database: 43,591,656
effective search space: 8020864704
effective search space used: 8020864704
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)