BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z48460.r
(302 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42790.1 68415.m05298 citrate synthase, glyoxysomal, put... 553 e-157
At3g58750.1 68416.m06548 citrate synthase, glyoxysomal, put... 109 1e-23
At3g58740.1 68416.m06547 citrate synthase, glyoxysomal, put... 101 3e-21
At4g00140.1 68417.m00014 expressed protein 36 0.16
At1g73440.1 68414.m08501 calmodulin-related low similarity ... 36 0.16
>At2g42790.1 68415.m05298 citrate synthase, glyoxysomal, putative strong
similarity to SP|P49299 Citrate synthase, glyoxysomal
precursor {Cucurbita maxima}; contains Pfam profile
PF00285: Citrate synthase
Length = 1864
Score = 553 bits (279), Expect = e-157
Identities = 295/301 (98%)
Strand = Plus / Plus
Query: 2 ttttggttgaatggagatatcagagagagttcgagctcgattagctgttctctcaggtca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 ttttggttgaatggagatatcagagagagttcgagctcgattagctgttctctcaggtca 108
Query: 62 tttatcggaaggaattcaggattctccagcgatcgagcgatggtgcacgtcggcggatac 121
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tttatcggaaggaaaacaggattctccagcgatcgagcgatggtgcacgtcggcggatac 168
Query: 122 gagtgtcgcaccgcttgnttctttgaagggaacactgacgatcgtcgacgaacgcaccgg 181
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 gagtgtcgcaccgcttggatctttgaagggaacactgacgatcgtcgacgaacgcaccgg 228
Query: 182 aaaaaattataaagtnccggtctcagatgatggtaccgttaaagccgttgatttcaaaaa 241
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 aaaaaattataaagttccggtctcagatgatggtaccgttaaagccgttgatttcaaaaa 288
Query: 242 gatagtgacggggaaggaagacaaggggcttaagttatacgatccaggttacttgaccac 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 289 gatagtgacggggaaggaagacaaggggcttaagttatacgatccaggttacttgaacac 348
Query: 302 g 302
|
Sbjct: 349 g 349
>At3g58750.1 68416.m06548 citrate synthase, glyoxysomal, putative strong
similarity to SP|P49299 Citrate synthase, glyoxysomal
precursor {Cucurbita maxima}; contains Pfam profile
PF00285: Citrate synthase
Length = 2027
Score = 109 bits (55), Expect = 1e-23
Identities = 123/146 (84%)
Strand = Plus / Plus
Query: 157 tgacgatcgtcgacgaacgcaccggaaaaaattataaagtnccggtctcagatgatggta 216
||||||||||||| || || || || || || ||| | || || |||||||| ||||||
Sbjct: 393 tgacgatcgtcgatgagcgtacggggaagaaatatcaggtccctgtctcagagcatggta 452
Query: 217 ccgttaaagccgttgatttcaaaaagatagtgacggggaaggaagacaaggggcttaagt 276
||||||||||||||||| |||| |||||| |||||||||||| || |||||||| ||||
Sbjct: 453 ccgttaaagccgttgatctcaagaagataacgacggggaaggatgataaggggctgaagt 512
Query: 277 tatacgatccaggttacttgaccacg 302
| |||||||| |||||||||| ||||
Sbjct: 513 tgtacgatcctggttacttgaacacg 538
>At3g58740.1 68416.m06547 citrate synthase, glyoxysomal, putative strong
similarity to SP|P49299 Citrate synthase, glyoxysomal
precursor {Cucurbita maxima}; contains Pfam profile
PF00285: Citrate synthase
Length = 1800
Score = 101 bits (51), Expect = 3e-21
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 201 gtctcagatgatggtaccgttaaagccgttgatttcaaaaagatagtgacggggaaggaa 260
|||||||| |||||||||||||| |||||||| |||| |||||| ||| ||||||||
Sbjct: 260 gtctcagagcatggtaccgttaaaaccgttgatctcaagaagataacgacagggaaggat 319
Query: 261 gacaaggggcttaagttatacgatccaggttactt 295
|||||||||||||| ||||||||||| ||||||||
Sbjct: 320 gacaaggggcttaacttatacgatcctggttactt 354
Score = 46.1 bits (23), Expect = 2e-04
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 11 aatggagatatcagagagagttcgagctcgattagctgttctc 53
||||||||| || ||||||| | ||||||||||||| ||||||
Sbjct: 64 aatggagatttcggagagagctagagctcgattagccgttctc 106
Score = 34.2 bits (17), Expect = 0.63
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 87 ccagcgatcgagcgatggtgcacgtcggc 115
||||||||||| | ||||||||| |||||
Sbjct: 146 ccagcgatcgaaccatggtgcacatcggc 174
>At4g00140.1 68417.m00014 expressed protein
Length = 774
Score = 36.2 bits (18), Expect = 0.16
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 24 gagagagttcgagctcga 41
||||||||||||||||||
Sbjct: 44 gagagagttcgagctcga 61
>At1g73440.1 68414.m08501 calmodulin-related low similarity to calmodulin 8
[Arabidopsis thaliana] GI:5825600; contains Pfam
profiles PF02809: Ubiquitin interaction motif, PF00036:
EF hand
Length = 988
Score = 36.2 bits (18), Expect = 0.16
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 24 gagagagttcgagctcga 41
||||||||||||||||||
Sbjct: 78 gagagagttcgagctcga 95
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6726
Number of Sequences: 29161
Number of extensions: 6726
Number of successful extensions: 524
Number of sequences better than 10.0: 32
length of query: 302
length of database: 44,058,232
effective HSP length: 16
effective length of query: 286
effective length of database: 43,591,656
effective search space: 12467213616
effective search space used: 12467213616
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)