BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z48453.r
(233 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56720.2 68414.m06524 protein kinase family protein cont... 377 e-104
At1g56720.1 68414.m06523 protein kinase family protein cont... 377 e-104
At3g11220.1 68416.m01364 Paxneb protein-related contains Pf... 42 0.002
At1g28270.1 68414.m03470 rapid alkalinization factor (RALF)... 40 0.008
At1g03190.2 68414.m00297 DNA repair protein / transcription... 38 0.031
>At1g56720.2 68414.m06524 protein kinase family protein contains protein kinase
domain, Pfam:PF00069
Length = 2061
Score = 377 bits (190), Expect = e-104
Identities = 202/206 (98%)
Strand = Plus / Minus
Query: 5 tacacaccaatatattatttgaatgtaggagctctaaacacaaatccagttcatatgtac 64
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2054 tacacaccaatatattattttgatgtaggagctctaaacacaaatccagttcatatgtac 1995
Query: 65 aaacaatcctctatggtctctactcatctcaattcaaaaccaaaaaaaaacaaacaaaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1994 aaacaatcctctatggtctctactcatctcaattcaaaaccaaaaaaaaacaaacaaaca 1935
Query: 125 ggaaatgcataagaacaagttcaaagaatagctcataatcatgaaacgcgttgaaagctt 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1934 gaaaatgcataagaacaagttcaaagaatagctcataatcatgaaacgcgttgaaagctt 1875
Query: 185 acgcagattgataaattatggtctct 210
||||||||||||||||||| ||||||
Sbjct: 1874 acgcagattgataaattattgtctct 1849
>At1g56720.1 68414.m06523 protein kinase family protein contains protein kinase
domain, Pfam:PF00069
Length = 1750
Score = 377 bits (190), Expect = e-104
Identities = 202/206 (98%)
Strand = Plus / Minus
Query: 5 tacacaccaatatattatttgaatgtaggagctctaaacacaaatccagttcatatgtac 64
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1735 tacacaccaatatattattttgatgtaggagctctaaacacaaatccagttcatatgtac 1676
Query: 65 aaacaatcctctatggtctctactcatctcaattcaaaaccaaaaaaaaacaaacaaaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1675 aaacaatcctctatggtctctactcatctcaattcaaaaccaaaaaaaaacaaacaaaca 1616
Query: 125 ggaaatgcataagaacaagttcaaagaatagctcataatcatgaaacgcgttgaaagctt 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1615 gaaaatgcataagaacaagttcaaagaatagctcataatcatgaaacgcgttgaaagctt 1556
Query: 185 acgcagattgataaattatggtctct 210
||||||||||||||||||| ||||||
Sbjct: 1555 acgcagattgataaattattgtctct 1530
>At3g11220.1 68416.m01364 Paxneb protein-related contains Pfam profile PF05625:
PAXNEB protein; similar to Paxneb protein (GI:10129788)
[Mus musculus]; similar to PAX neighbour protein
(GI:15887001) [Takifugu rubripes]
Length = 1329
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 101 aaaccaaaaaaaaacaaacaa 121
|||||||||||||||||||||
Sbjct: 23 aaaccaaaaaaaaacaaacaa 3
>At1g28270.1 68414.m03470 rapid alkalinization factor (RALF) family protein
similar to RALF precursor [Nicotiana tabacum]
GI:16566316
Length = 833
Score = 40.1 bits (20), Expect = 0.008
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 99 caaaaccaaaaaaaaacaaa 118
||||||||||||||||||||
Sbjct: 108 caaaaccaaaaaaaaacaaa 127
>At1g03190.2 68414.m00297 DNA repair protein / transcription factor protein (UVH6)
identical to DNA repair/transcription factor protein
(UVH6) gi:22651569 gb:AY090788
Length = 2676
Score = 38.2 bits (19), Expect = 0.031
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 101 aaaccaaaaaaaaacaaacaaac 123
||||||||||| |||||||||||
Sbjct: 2507 aaaccaaaaaataacaaacaaac 2485
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9992
Number of Sequences: 29161
Number of extensions: 9992
Number of successful extensions: 1212
Number of sequences better than 10.0: 192
length of query: 233
length of database: 44,058,232
effective HSP length: 16
effective length of query: 217
effective length of database: 43,591,656
effective search space: 9459389352
effective search space used: 9459389352
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)