BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z48421.r
         (216 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_173419.1|  glyoxal oxidase-related [Arabidopsis thali...    45   5e-04
pir||D86332  hypothetical protein F6F9.4 [imported] - Arabid...    45   5e-04
ref|NP_177692.1|  glyoxal oxidase-related [Arabidopsis thali...    41   0.006
pir||H86278  F14L17.20 protein - Arabidopsis thaliana|gi|726...    31   7.7  

>ref|NP_173419.1| glyoxal oxidase-related [Arabidopsis
           thaliana]|gi|16604507|gb|AAL24259.1| At1g19900/F6F9_4
           [Arabidopsis thaliana]
          Length = 548

 Score = 44.7 bits (104), Expect = 5e-04
 Identities = 20/23 (86%), Positives = 20/23 (86%)
 Frame = -2

Query: 200 PG*YMXIVVNQDIPSEGVWVKLE 132
           PG YM  VVNQDIPSEGVWVKLE
Sbjct: 526 PGYYMIFVVNQDIPSEGVWVKLE 548



>pir||D86332 hypothetical protein F6F9.4 [imported] - Arabidopsis
           thaliana|gi|10086483|gb|AAG12543.1| Unknown Protein
           [Arabidopsis thaliana]
          Length = 504

 Score = 44.7 bits (104), Expect = 5e-04
 Identities = 20/23 (86%), Positives = 20/23 (86%)
 Frame = -2

Query: 200 PG*YMXIVVNQDIPSEGVWVKLE 132
           PG YM  VVNQDIPSEGVWVKLE
Sbjct: 482 PGYYMIFVVNQDIPSEGVWVKLE 504



>ref|NP_177692.1| glyoxal oxidase-related [Arabidopsis
           thaliana]|gi|9369366|gb|AAF87115.1| F10A5.18
           [Arabidopsis thaliana]
          Length = 547

 Score = 41.2 bits (95), Expect = 0.006
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = -2

Query: 200 PG*YMXIVVNQDIPSEGVWVKLE 132
           PG YM  VVNQDIPSEG+WV+L+
Sbjct: 525 PGYYMVFVVNQDIPSEGLWVRLQ 547



>pir||H86278 F14L17.20 protein - Arabidopsis thaliana|gi|7262685|gb|AAF43943.1|
           Weak similarity to glyoxal oxidase (glx2) from
           Phanerochaete chrysosporium gb|L47287. [Arabidopsis
           thaliana]
          Length = 564

 Score = 30.8 bits (68), Expect = 7.7
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 200 PG*YMXIVVNQDIPSEGVWVKL 135
           PG YM  VV++ IPS  VWVK+
Sbjct: 543 PGYYMMFVVHRGIPSVAVWVKI 564



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 47
effective length of database: 540,633,912
effective search space used: 12975213888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)