BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z48418.r
(249 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g68850.1 68414.m09507 peroxidase, putative identical to ... 436 e-122
At5g51180.2 68418.m06346 expressed protein 34 0.52
At5g51180.1 68418.m06345 expressed protein 34 0.52
At1g32300.1 68414.m03977 FAD-binding domain-containing prot... 34 0.52
At5g56760.1 68418.m07084 serine O-acetyltransferase (SAT-52... 32 2.0
>At1g68850.1 68414.m09507 peroxidase, putative identical to peroxidase ATP23a
GB:CAA70035 (Arabidopsis thaliana)
Length = 1257
Score = 436 bits (220), Expect = e-122
Identities = 239/245 (97%), Gaps = 1/245 (0%)
Strand = Plus / Minus
Query: 5 aaacaactacagactcagatcaattgaaaatcattagaataaggttttaaacattcaaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1257 aaacaactacagactcagatcaattgaaaatcattagaataaggttttaaacattcaaga 1198
Query: 65 accctatagttttaaaaatgtagaaataaataagggaaagaataacatcaaattaaattt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1197 accctatagttttaaaaatgtagaaataaataagggaaagaataacatcaaattaaattt 1138
Query: 125 ttcctttcttatataaataaagatcagaaatagattatnttccccatttttnagtttcgt 184
|| ||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct: 1137 tttctttcttatataaataaagatcagaaatagattattttctccattttttagtttcgt 1078
Query: 185 ngttgatgaatcatgtattcacaaatctgcaatttccttctaacttctccatcagccaag 244
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1077 tgttgatgaatcatgtattcacaaatctgcaattt-cttctaacttctccatcagccaag 1019
Query: 245 ctttc 249
|||||
Sbjct: 1018 ctttc 1014
>At5g51180.2 68418.m06346 expressed protein
Length = 1586
Score = 34.2 bits (17), Expect = 0.52
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 194 atcatgtattcacaaat 210
|||||||||||||||||
Sbjct: 1526 atcatgtattcacaaat 1542
>At5g51180.1 68418.m06345 expressed protein
Length = 1687
Score = 34.2 bits (17), Expect = 0.52
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 194 atcatgtattcacaaat 210
|||||||||||||||||
Sbjct: 1627 atcatgtattcacaaat 1643
>At1g32300.1 68414.m03977 FAD-binding domain-containing protein strong similarity
to At5g56490, At2g46740, At2g46750, At2g46760; contains
PF01565: FAD binding domain
Length = 1788
Score = 34.2 bits (17), Expect = 0.52
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 108 aacatcaaattaaattt 124
|||||||||||||||||
Sbjct: 1775 aacatcaaattaaattt 1759
>At5g56760.1 68418.m07084 serine O-acetyltransferase (SAT-52) identical to
GI:905391
Length = 1206
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 105 aataacatcaaattaa 120
||||||||||||||||
Sbjct: 1175 aataacatcaaattaa 1160
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8219
Number of Sequences: 29161
Number of extensions: 8219
Number of successful extensions: 672
Number of sequences better than 10.0: 47
length of query: 249
length of database: 44,058,232
effective HSP length: 16
effective length of query: 233
effective length of database: 43,591,656
effective search space: 10156855848
effective search space used: 10156855848
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)