BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z48406.r
(284 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10490.2 68416.m01259 no apical meristem (NAM) family pr... 367 e-101
At3g10490.1 68416.m01258 no apical meristem (NAM) family pr... 367 e-101
At3g10480.1 68416.m01256 no apical meristem (NAM) family pr... 62 3e-09
At3g10480.2 68416.m01257 no apical meristem (NAM) family pr... 58 4e-08
At5g03730.2 68418.m00334 serine/threonine protein kinase (C... 34 0.59
>At3g10490.2 68416.m01259 no apical meristem (NAM) family protein similar to to
NAC2 (GI:645671) [Arabidopsis thaliana]; contains Pfam
PF02365: No apical meristem (NAM) protein
Length = 1756
Score = 367 bits (185), Expect = e-101
Identities = 225/238 (94%), Gaps = 1/238 (0%)
Strand = Plus / Minus
Query: 7 tctgaaaagactagatagatagatgatatatgtcaatggagcaacctaaaaaatgttctc 66
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1756 tctgaaaagactagatagatagatgatatatgacaatggagcaacctaaaaaatgttctc 1697
Query: 67 aaaag-tgcaagaacatccacacaaaaaaaggnggagggtaaaacactcagctcaggggg 125
||||| ||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 1696 aaaagatgcaagaacatccacacaaaaaaagaagaaggataaaacactcagctcaggggc 1637
Query: 126 tcgaatccnttttatcccatgttacaacagagattcacacagttcgcaatctgtctagag 185
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1636 tcgaatccgttttatcctatgttacaacagagattcacacagttcgcaatctgtctagag 1577
Query: 186 gagctatgtagatgggtcatagtattaggggggttaaagctaaatanaaggcggaggg 243
|||||||||||||||||||||||||||||| | ||||||||||||| |||||| ||||
Sbjct: 1576 gagctatgtagatgggtcatagtattagggagattaaagctaaataaaaggcgaaggg 1519
>At3g10490.1 68416.m01258 no apical meristem (NAM) family protein similar to to
NAC2 (GI:645671) [Arabidopsis thaliana]; contains Pfam
PF02365: No apical meristem (NAM) protein
Length = 1792
Score = 367 bits (185), Expect = e-101
Identities = 225/238 (94%), Gaps = 1/238 (0%)
Strand = Plus / Minus
Query: 7 tctgaaaagactagatagatagatgatatatgtcaatggagcaacctaaaaaatgttctc 66
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1792 tctgaaaagactagatagatagatgatatatgacaatggagcaacctaaaaaatgttctc 1733
Query: 67 aaaag-tgcaagaacatccacacaaaaaaaggnggagggtaaaacactcagctcaggggg 125
||||| ||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 1732 aaaagatgcaagaacatccacacaaaaaaagaagaaggataaaacactcagctcaggggc 1673
Query: 126 tcgaatccnttttatcccatgttacaacagagattcacacagttcgcaatctgtctagag 185
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1672 tcgaatccgttttatcctatgttacaacagagattcacacagttcgcaatctgtctagag 1613
Query: 186 gagctatgtagatgggtcatagtattaggggggttaaagctaaatanaaggcggaggg 243
|||||||||||||||||||||||||||||| | ||||||||||||| |||||| ||||
Sbjct: 1612 gagctatgtagatgggtcatagtattagggagattaaagctaaataaaaggcgaaggg 1555
>At3g10480.1 68416.m01256 no apical meristem (NAM) family protein similar to to
NAC2 (GI:645671) [Arabidopsis thaliana]; contains Pfam
PF02365: No apical meristem (NAM) protein; N-terminus
similar to unknown protein GB:AAD25613 [Arabidopsis
thaliana]
Length = 1706
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 4 ttgtctgaaaagactagatagatagatgata 34
|||||||||||||||||||||||||||||||
Sbjct: 1681 ttgtctgaaaagactagatagatagatgata 1651
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 147 ttacaacagagattca 162
||||||||||||||||
Sbjct: 1534 ttacaacagagattca 1519
>At3g10480.2 68416.m01257 no apical meristem (NAM) family protein similar to to
NAC2 (GI:645671) [Arabidopsis thaliana]; contains Pfam
PF02365: No apical meristem (NAM) protein; N-terminus
similar to unknown protein GB:AAD25613 [Arabidopsis
thaliana]
Length = 1676
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 6 gtctgaaaagactagatagatagatgata 34
|||||||||||||||||||||||||||||
Sbjct: 1676 gtctgaaaagactagatagatagatgata 1648
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 147 ttacaacagagattca 162
||||||||||||||||
Sbjct: 1531 ttacaacagagattca 1516
>At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1) identical to
serine/threonine-protein kinase CTR1 [Arabidopsis
thaliana] SWISS-PROT:Q05609
Length = 2964
Score = 34.2 bits (17), Expect = 0.59
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 15 gactagatagatagatgatat 35
|||||||||||||||| ||||
Sbjct: 2823 gactagatagatagattatat 2803
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5980
Number of Sequences: 29161
Number of extensions: 5980
Number of successful extensions: 391
Number of sequences better than 10.0: 37
length of query: 284
length of database: 44,058,232
effective HSP length: 16
effective length of query: 268
effective length of database: 43,591,656
effective search space: 11682563808
effective search space used: 11682563808
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)