BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z48396.r
         (230 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_188605.1|  branched-chain amino acid aminotransferase...    40   0.010
gb|AAP31024.1|  zinc transporter [Oryza sativa (japonica cul...    31   5.8  

>ref|NP_188605.1| branched-chain amino acid aminotransferase, putative /
           branched-chain amino acid transaminase, putative (BCAT4)
           [Arabidopsis thaliana]|gi|26391664|sp|Q9LE06|BCA4_ARATH
           Probable branched-chain amino acid aminotransferase 4
           (Atbcat-4)|gi|25327757|pir||T52401 branched-chain amino
           acid aminotransferase-like protein [imported] -
           Arabidopsis thaliana|gi|8249006|emb|CAB93129.1|
           branched-chain amino acid transaminase [Arabidopsis
           thaliana]|gi|9294438|dbj|BAB02558.1| branched-chain
           amino acid aminotransferase-like protein [Arabidopsis
           thaliana]|gi|15450617|gb|AAK96580.1| AT3g19710/MMB12_16
           [Arabidopsis thaliana]|gi|17386158|gb|AAL38625.1|
           AT3g19710/MMB12_16 [Arabidopsis thaliana]
          Length = 354

 Score = 40.4 bits (93), Expect = 0.010
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = -3

Query: 210 GRVEDTKGWTVEIDRQG 160
           GRVEDTKGWTVEIDRQG
Sbjct: 338 GRVEDTKGWTVEIDRQG 354



>gb|AAP31024.1| zinc transporter [Oryza sativa (japonica cultivar-group)]
          Length = 418

 Score = 31.2 bits (69), Expect = 5.8
 Identities = 16/43 (37%), Positives = 22/43 (50%)
 Frame = +1

Query: 52  HDHHNHKDQRHLQMXLT*VXYTHTHIFGIRLQCHLSALAVNLH 180
           HDHH+H+DQ H         + H H  G     H +++ VNLH
Sbjct: 207 HDHHHHEDQEH--------GHVHHHEDG-----HGNSITVNLH 236



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 52
effective length of database: 531,157,422
effective search space used: 12747778128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)