BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CD533835.r
(100 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_850968.1| glycosyl hydrolase family 1 protein [Arabi... 71 6e-12
pir||T02128 beta-glucosidase homolog F8K4.3 - Arabidopsis t... 71 6e-12
gb|AAN60285.1| unknown [Arabidopsis thaliana] 71 6e-12
ref|NP_176374.1| glycosyl hydrolase family 1 protein [Arabi... 54 7e-07
ref|NP_974066.1| glycosyl hydrolase family 1 protein [Arabi... 54 7e-07
emb|CAE54546.1| OSJNBa0004N05.26 [Oryza sativa (japonica cu... 54 7e-07
emb|CAE03397.2| OSJNBa0004N05.21 [Oryza sativa (japonica cu... 54 7e-07
gb|AAC69619.1| beta-glucosidase [Pinus contorta] 53 2e-06
gb|AAP13852.1| glucosidase [Bombyx mori] 51 8e-06
emb|CAE54545.1| OSJNBa0004N05.25 [Oryza sativa (japonica cu... 51 8e-06
>ref|NP_850968.1| glycosyl hydrolase family 1 protein [Arabidopsis thaliana]
Length = 516
Score = 71.2 bits (173), Expect = 6e-12
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +1
Query: 1 IATDQYHRYMEDIQSMNFLGVNSYRLSISWSRV 99
IATDQYHRYMEDIQSMNFLGVNSYRLSISWSRV
Sbjct: 83 IATDQYHRYMEDIQSMNFLGVNSYRLSISWSRV 115
>pir||T02128 beta-glucosidase homolog F8K4.3 - Arabidopsis
thaliana|gi|3367517|gb|AAC28502.1| Similar to F4I1.26
putative beta-glucosidase gi|3128187 from A. thaliana
BAC gb|AC004521. ESTs gb|N97083, gb|F19868 and
gb|F15482 come from this gene. [Arabidopsis thaliana]
Length = 527
Score = 71.2 bits (173), Expect = 6e-12
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +1
Query: 1 IATDQYHRYMEDIQSMNFLGVNSYRLSISWSRV 99
IATDQYHRYMEDIQSMNFLGVNSYRLSISWSRV
Sbjct: 94 IATDQYHRYMEDIQSMNFLGVNSYRLSISWSRV 126
>gb|AAN60285.1| unknown [Arabidopsis thaliana]
Length = 137
Score = 71.2 bits (173), Expect = 6e-12
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +1
Query: 1 IATDQYHRYMEDIQSMNFLGVNSYRLSISWSRV 99
IATDQYHRYMEDIQSMNFLGVNSYRLSISWSRV
Sbjct: 83 IATDQYHRYMEDIQSMNFLGVNSYRLSISWSRV 115
>ref|NP_176374.1| glycosyl hydrolase family 1 protein [Arabidopsis
thaliana]|gi|7435449|pir||T02127 beta-glucosidase
homolog F8K4.2 - Arabidopsis
thaliana|gi|3367516|gb|AAC28501.1| Similar to
beta-glucosidase BGQ60 precursor gb|L41869 from Hordeum
vulgare. [Arabidopsis thaliana]
Length = 520
Score = 54.3 bits (129), Expect = 7e-07
Identities = 23/32 (71%), Positives = 28/32 (86%)
Frame = +1
Query: 4 ATDQYHRYMEDIQSMNFLGVNSYRLSISWSRV 99
A DQY+R++EDIQ M+FLGVNSYR SISW R+
Sbjct: 87 AVDQYNRFLEDIQLMSFLGVNSYRFSISWCRI 118
>ref|NP_974066.1| glycosyl hydrolase family 1 protein [Arabidopsis thaliana]
Length = 122
Score = 54.3 bits (129), Expect = 7e-07
Identities = 23/32 (71%), Positives = 28/32 (86%)
Frame = +1
Query: 4 ATDQYHRYMEDIQSMNFLGVNSYRLSISWSRV 99
A DQY+R++EDIQ M+FLGVNSYR SISW R+
Sbjct: 87 AVDQYNRFLEDIQLMSFLGVNSYRFSISWCRI 118
>emb|CAE54546.1| OSJNBa0004N05.26 [Oryza sativa (japonica
cultivar-group)]|gi|38345687|emb|CAE01910.2|
OSJNBb0070J16.3 [Oryza sativa (japonica cultivar-group)]
Length = 505
Score = 54.3 bits (129), Expect = 7e-07
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = +1
Query: 1 IATDQYHRYMEDIQSMNFLGVNSYRLSISWSRV 99
IA D YHRY ED++ MN LGVN+YR SISWSR+
Sbjct: 79 IADDHYHRYEEDVELMNSLGVNAYRFSISWSRI 111
>emb|CAE03397.2| OSJNBa0004N05.21 [Oryza sativa (japonica cultivar-group)]
Length = 516
Score = 54.3 bits (129), Expect = 7e-07
Identities = 23/32 (71%), Positives = 27/32 (83%)
Frame = +1
Query: 4 ATDQYHRYMEDIQSMNFLGVNSYRLSISWSRV 99
A D YHRYMEDI+ M+ LGVNSYR SISW+R+
Sbjct: 77 ANDHYHRYMEDIELMHSLGVNSYRFSISWARI 108
>gb|AAC69619.1| beta-glucosidase [Pinus contorta]
Length = 513
Score = 53.1 bits (126), Expect = 2e-06
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = +1
Query: 1 IATDQYHRYMEDIQSMNFLGVNSYRLSISWSRV 99
+A DQYHRYMEDI+ M LG+++YR SISWSR+
Sbjct: 77 VAVDQYHRYMEDIELMASLGLDAYRFSISWSRI 109
>gb|AAP13852.1| glucosidase [Bombyx mori]
Length = 491
Score = 50.8 bits (120), Expect = 8e-06
Identities = 18/33 (54%), Positives = 27/33 (81%)
Frame = +1
Query: 1 IATDQYHRYMEDIQSMNFLGVNSYRLSISWSRV 99
+A D YHRY+ED++ + +LGV+ YR S+SWSR+
Sbjct: 71 VACDSYHRYLEDVEELTYLGVDFYRFSLSWSRI 103
>emb|CAE54545.1| OSJNBa0004N05.25 [Oryza sativa (japonica
cultivar-group)]|gi|38345686|emb|CAE01909.2|
OSJNBb0070J16.2 [Oryza sativa (japonica cultivar-group)]
Length = 284
Score = 50.8 bits (120), Expect = 8e-06
Identities = 20/33 (60%), Positives = 27/33 (81%)
Frame = +1
Query: 1 IATDQYHRYMEDIQSMNFLGVNSYRLSISWSRV 99
+A D YHRY ED++ ++ LGVNSYR SISW+R+
Sbjct: 64 VADDHYHRYTEDVEILHNLGVNSYRFSISWARI 96
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 8
effective length of database: 614,550,534
effective search space used: 14749212816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)