BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AU226071_RAFL14_07_J02.r
         (427 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_329273.1|  hypothetical protein [Neurospora crassa]|g...    32   2.6  
ref|NP_648452.1|  CG6190-PA [Drosophila melanogaster]|gi|729...    31   4.5  

>ref|XP_329273.1| hypothetical protein [Neurospora crassa]|gi|28926398|gb|EAA35374.1|
           hypothetical protein [Neurospora crassa]
          Length = 2558

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 18/42 (42%), Positives = 22/42 (51%)
 Frame = -3

Query: 347 IWCSHCISEVKGLIASCWSTLKVCRNDESVINQARRLYHLGS 222
           I+CS C S + G       TL+VC+N   VIN   R Y  GS
Sbjct: 490 IFCSKCTSTISGQKFGVQGTLRVCKNCLEVIN---RRYESGS 528



>ref|NP_648452.1| CG6190-PA [Drosophila melanogaster]|gi|7294742|gb|AAF50078.1|
           CG6190-PA [Drosophila
           melanogaster]|gi|17862314|gb|AAL39634.1| LD21888p
           [Drosophila melanogaster]
          Length = 973

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -3

Query: 350 RIWCSHCISEVKGLIASCWS--TLKVCRNDESV 258
           RIW +HC  ++  LIA+C    TL+V  ++ES+
Sbjct: 405 RIWAAHCSDQLHSLIAACQQQITLQVLLDEESM 437



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 117
effective length of database: 407,963,052
effective search space used: 9791113248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)