BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226062_RAFL14_07_E12.r
(443 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06390.1 68418.m00715 beta-Ig-H3 domain-containing prote... 854 0.0
At1g01490.1 68414.m00065 heavy-metal-associated domain-cont... 52 4e-06
At3g11700.1 68416.m01434 beta-Ig-H3 domain-containing prote... 42 0.004
At5g28237.1 68418.m03422 tryptophan synthase, beta subunit,... 36 0.24
At3g61190.1 68416.m06848 BON1-associated protein 1 (BAP1) i... 34 0.94
>At5g06390.1 68418.m00715 beta-Ig-H3 domain-containing protein / fasciclin
domain-containing protein contains Pfam profile PF02469:
Fasciclin domain
Length = 2116
Score = 854 bits (431), Expect = 0.0
Identities = 441/443 (99%), Gaps = 1/443 (0%)
Strand = Plus / Minus
Query: 2 gaaaaacaaaattcagacaacttcagtattaagacttgagatttctcacaaagacagcta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2116 gaaaaacaaaattcagacaacttcagtattaagacttgagatttctcacaaagacagcta 2057
Query: 62 agttttgagtttgtcctccaataatcaacaaacacagcctgaaccaactcatttcccatg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2056 agttttgagtttgtcctccaataatcaacaaacacagcctgaaccaactcatttcccatg 1997
Query: 122 tccaggtccacgtgaatataatttgttctaccaaaatatatcacattataaatattacat 181
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1996 tccacgtccacgtgaatataatttgttctaccaaaatatatcacattataaatattacat 1937
Query: 182 tctctcaaaatactacagtcagagacatctaagaaaaaggtgacgatggatgtaatttaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1936 tctctcaaaatactacagtcagagacatctaagaaaaaggtgacgatggatgtaatttaa 1877
Query: 242 ttattcccttgctcttaccatacacaaagtggaattatactttccctatagtaaaagcca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1876 ttattcccttgctcttaccatacacaaagtggaattatactttccctatagtaaaagcca 1817
Query: 302 aagactccaaaacaacaaatccttaccatggaagaaaaaaactttgttctctctttttat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1816 aagactccaaaacaacaaatccttaccatggaagaaaaaaactttgttctctctttttat 1757
Query: 362 ttagtgtactctcattctcataca-caccaaattaattaaaaaatgattgatatatctaa 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1756 ttagtgtactctcattctcatacaccaccaaattaattaaaaaatgattgatatatctaa 1697
Query: 421 ttacagtattcataatccatgaa 443
|||||||||||||||||||||||
Sbjct: 1696 ttacagtattcataatccatgaa 1674
>At1g01490.1 68414.m00065 heavy-metal-associated domain-containing protein
contains Pfam profile PF00403: Heavy-metal-associated
domain
Length = 1067
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 152 ccaaaatatatcacattataaatatt 177
||||||||||||||||||||||||||
Sbjct: 812 ccaaaatatatcacattataaatatt 787
>At3g11700.1 68416.m01434 beta-Ig-H3 domain-containing protein / fasciclin
domain-containing protein contains Pfam profile PF02469:
Fasciclin domain
Length = 1970
Score = 42.1 bits (21), Expect = 0.004
Identities = 47/53 (88%), Gaps = 2/53 (3%)
Strand = Plus / Minus
Query: 385 acaccaaattaatt-aaaaaatga-ttgatatatctaattacagtattcataa 435
||||||||| |||| ||||||||| || ||||||||||||||||||| ||||
Sbjct: 1845 acaccaaatcaattgaaaaaatgagttcttatatctaattacagtatttataa 1793
>At5g28237.1 68418.m03422 tryptophan synthase, beta subunit, putative similar to
SP|P14671 Tryptophan synthase beta chain 1, chloroplast
precursor (EC 4.2.1.20) {Arabidopsis thaliana}; contains
Pfam profile PF00291: Pyridoxal-phosphate dependent
enzyme
Length = 1578
Score = 36.2 bits (18), Expect = 0.24
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 395 aattaaaaaatgattgatatat 416
||||||| ||||||||||||||
Sbjct: 1557 aattaaataatgattgatatat 1536
>At3g61190.1 68416.m06848 BON1-associated protein 1 (BAP1) identical to
BON1-associated protein 1 [Arabidopsis thaliana]
GI:15487384; contains Pfam profile PF00168: C2 domain;
supporting cDNA gi|15487383|gb|AY045765.1|
Length = 923
Score = 34.2 bits (17), Expect = 0.94
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 148 tctaccaaaatatatca 164
|||||||||||||||||
Sbjct: 52 tctaccaaaatatatca 36
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,100
Number of Sequences: 29161
Number of extensions: 17100
Number of successful extensions: 1367
Number of sequences better than 10.0: 26
length of query: 443
length of database: 44,058,232
effective HSP length: 17
effective length of query: 426
effective length of database: 43,562,495
effective search space: 18557622870
effective search space used: 18557622870
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)