BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226044_RAFL14_06_A21.r
(428 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g04940.1 68414.m00491 tic20 family protein similar to Ti... 848 0.0
At5g23150.1 68418.m02707 PWWP domain-containing protein ide... 38 0.058
At3g21430.1 68416.m02704 expressed protein 36 0.23
At1g76270.1 68414.m08856 expressed protein contains Pfam PF... 34 0.91
At1g73380.2 68414.m08494 expressed protein 34 0.91
>At1g04940.1 68414.m00491 tic20 family protein similar to Tic20 (GI:3769673)
[Pisum sativum]; contains TIGRFAM IGR00994: chloroplast
protein import component, Tic20 family
Length = 1991
Score = 848 bits (428), Expect = 0.0
Identities = 428/428 (100%)
Strand = Plus / Minus
Query: 1 gggcaaactacaaggtttggtctgtattacattgactataaagaagatctgaaagacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1991 gggcaaactacaaggtttggtctgtattacattgactataaagaagatctgaaagacaac 1932
Query: 61 aagattaatttatgaggatctataggaggataagactgaacaaaagtttcggagacattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1931 aagattaatttatgaggatctataggaggataagactgaacaaaagtttcggagacattc 1872
Query: 121 ttaagttaactatcttgtatgtaaacaatcaagtttgctacaaaccacagaacagcctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1871 ttaagttaactatcttgtatgtaaacaatcaagtttgctacaaaccacagaacagcctag 1812
Query: 181 taatctggtttactacaaaagaaatacctgttgatcaaagcccagaccgaaaacttatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1811 taatctggtttactacaaaagaaatacctgttgatcaaagcccagaccgaaaacttatga 1752
Query: 241 ccatcagtgctgtggcttattgcattccagtaaaagctttggctattaccaagtatagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1751 ccatcagtgctgtggcttattgcattccagtaaaagctttggctattaccaagtatagct 1692
Query: 301 aatgtgctcgaacaagagagcttcaggcatgaacataatcctcaaaaatgtttcacagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1691 aatgtgctcgaacaagagagcttcaggcatgaacataatcctcaaaaatgtttcacagag 1632
Query: 361 agtaattcctttttgccagaacaagactatgaccatcattcgacgatttccccttcttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1631 agtaattcctttttgccagaacaagactatgaccatcattcgacgatttccccttcttct 1572
Query: 421 aaatctag 428
||||||||
Sbjct: 1571 aaatctag 1564
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to cDNA
putative transcription factor (HUA2) GI:4868119; contains
Pfam profile PF00855: PWWP domain
Length = 4926
Score = 38.2 bits (19), Expect = 0.058
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 263 cattccagtaaaagctttg 281
|||||||||||||||||||
Sbjct: 4890 cattccagtaaaagctttg 4872
>At3g21430.1 68416.m02704 expressed protein
Length = 3058
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 346 aaatgtttcacagagagt 363
||||||||||||||||||
Sbjct: 1578 aaatgtttcacagagagt 1595
>At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138: Plant protein
family. The function of this family of plant proteins is
unknown; previously annotated as ' auxin-independent
growth promoter -related' based on similarity to axi 1
protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.
Length = 2477
Score = 34.2 bits (17), Expect = 0.91
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 280 tggctattaccaagtat 296
|||||||||||||||||
Sbjct: 542 tggctattaccaagtat 526
>At1g73380.2 68414.m08494 expressed protein
Length = 1495
Score = 34.2 bits (17), Expect = 0.91
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 7 actacaaggtttggtct 23
|||||||||||||||||
Sbjct: 1440 actacaaggtttggtct 1424
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,264
Number of Sequences: 29161
Number of extensions: 12264
Number of successful extensions: 918
Number of sequences better than 10.0: 18
length of query: 428
length of database: 44,058,232
effective HSP length: 17
effective length of query: 411
effective length of database: 43,562,495
effective search space: 17904185445
effective search space used: 17904185445
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)