BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226009_RAFL14_04_D23.r
(421 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_702201.1| hypothetical protein [Plasmodium falciparu... 37 0.11
gb|AAN86214.1| merozoite surface protein 1 [Plasmodium vivax] 33 1.5
gb|AAM22842.1| merozoite surface protein 1 [Plasmodium vivax] 33 1.5
gb|AAN86237.1| merozoite surface protein 1 [Plasmodium vivax] 33 1.5
gb|AAN86223.1| merozoite surface protein 1 [Plasmodium vivax] 33 1.5
gb|AAN86211.1| merozoite surface protein 1 [Plasmodium vivax] 33 1.5
gb|AAN86231.1| merozoite surface protein 1 [Plasmodium vivax] 32 3.4
ref|NP_762208.1| Conserved hypothetical protein [Vibrio vul... 31 5.9
ref|ZP_00311086.1| hypothetical protein Chut02000701 [Cytop... 31 5.9
emb|CAE58764.1| Hypothetical protein CBG01956 [Caenorhabdit... 31 5.9
>ref|NP_702201.1| hypothetical protein [Plasmodium falciparum
3D7]|gi|23497381|gb|AAN36925.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1051
Score = 36.6 bits (83), Expect = 0.11
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Frame = -3
Query: 392 LIFTRVFDIVAT--NNISVHTK--------CLFNVYMRLQFVCFLAS*G*KFHSSFLLVC 243
L F R+ D+ T NISV+ K C+ N+ ++ +L S ++S FLL+
Sbjct: 908 LKFERIIDMSITILTNISVYIKSMNTYSCECIINILNKVLKKEWLLSSQHHYYSLFLLLD 967
Query: 242 KKNSISSKKKGRCFYVVFPIVKSNVSFGRVRGVNFIQLKSNFFFYVS*INFSLVTKKSKK 63
N+I S + +V+ I+K+ F ++ +N I LKSN+F S ++ + T+
Sbjct: 968 FINNILSHNLIDNYNLVYMIIKNKHVFFKIHNLNQI-LKSNYFVGSSTKDYWIPTESWLV 1026
Query: 62 VWSGR 48
W +
Sbjct: 1027 SWMNK 1031
>gb|AAN86214.1| merozoite surface protein 1 [Plasmodium vivax]
Length = 1743
Score = 32.7 bits (73), Expect = 1.5
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 150 SHSAEADVRFDYGEYNVETSPFLLT*NGIFFTDQ*KRRMEFLPLTSQKTNKLKSHVNVKQ 329
S A AD R +YN + F N IF+T+Q + + + + ++ LK H ++K
Sbjct: 264 SSQARADSRSTDTDYNAKKIIFQAVYNTIFYTNQLQEAQKLIAVLEKRVKVLKEHKDIKV 323
Query: 330 AL 335
L
Sbjct: 324 LL 325
>gb|AAM22842.1| merozoite surface protein 1 [Plasmodium vivax]
Length = 193
Score = 32.7 bits (73), Expect = 1.5
Identities = 20/65 (30%), Positives = 32/65 (48%)
Frame = +3
Query: 141 IDPSHSAEADVRFDYGEYNVETSPFLLT*NGIFFTDQ*KRRMEFLPLTSQKTNKLKSHVN 320
I PS A AD R +YN + F N IF+T+Q + + + + ++ LK H +
Sbjct: 90 ISPSQ-ARADSRSTGTDYNAKKIIFQAVYNTIFYTNQLQEAQKLIAVLEKRVKVLKEHKD 148
Query: 321 VKQAL 335
+K L
Sbjct: 149 IKVLL 153
>gb|AAN86237.1| merozoite surface protein 1 [Plasmodium vivax]
Length = 1741
Score = 32.7 bits (73), Expect = 1.5
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 150 SHSAEADVRFDYGEYNVETSPFLLT*NGIFFTDQ*KRRMEFLPLTSQKTNKLKSHVNVKQ 329
S A AD R +YN + F N IF+T+Q + + + + ++ LK H ++K
Sbjct: 264 SSQARADSRSTDTDYNAKKIIFQAVYNTIFYTNQLQEAQKLIAVLEKRVKVLKEHKDIKV 323
Query: 330 AL 335
L
Sbjct: 324 LL 325
>gb|AAN86223.1| merozoite surface protein 1 [Plasmodium vivax]
Length = 1743
Score = 32.7 bits (73), Expect = 1.5
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 150 SHSAEADVRFDYGEYNVETSPFLLT*NGIFFTDQ*KRRMEFLPLTSQKTNKLKSHVNVKQ 329
S A AD R +YN + F N IF+T+Q + + + + ++ LK H ++K
Sbjct: 264 SSQARADSRSTDTDYNAKKIIFQAVYNTIFYTNQLQEAQKLIAVLEKRVKVLKEHKDIKV 323
Query: 330 AL 335
L
Sbjct: 324 LL 325
>gb|AAN86211.1| merozoite surface protein 1 [Plasmodium vivax]
Length = 1736
Score = 32.7 bits (73), Expect = 1.5
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 150 SHSAEADVRFDYGEYNVETSPFLLT*NGIFFTDQ*KRRMEFLPLTSQKTNKLKSHVNVKQ 329
S A AD R +YN + F N IF+T+Q + + + + ++ LK H ++K
Sbjct: 264 SSQARADSRSTDTDYNAKKIIFQAVYNTIFYTNQLQEAQKLIAVLEKRVKVLKEHKDIKV 323
Query: 330 AL 335
L
Sbjct: 324 LL 325
>gb|AAN86231.1| merozoite surface protein 1 [Plasmodium vivax]
Length = 1742
Score = 31.6 bits (70), Expect = 3.4
Identities = 17/62 (27%), Positives = 30/62 (47%)
Frame = +3
Query: 150 SHSAEADVRFDYGEYNVETSPFLLT*NGIFFTDQ*KRRMEFLPLTSQKTNKLKSHVNVKQ 329
S A AD R +YN + + N IF+T+Q + + + + ++ LK H ++K
Sbjct: 264 SSQARADSRSTDTDYNAKKIIYQAVYNTIFYTNQLQEAQKLIAVLEKRVKVLKEHKDIKV 323
Query: 330 AL 335
L
Sbjct: 324 LL 325
>ref|NP_762208.1| Conserved hypothetical protein [Vibrio vulnificus
CMCP6]|gi|27358247|gb|AAO07198.1| Conserved hypothetical
protein [Vibrio vulnificus CMCP6]
Length = 178
Score = 30.8 bits (68), Expect = 5.9
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -1
Query: 289 WLVRGKNSILLFYWSVKKIPFQVRRKGDVS-TLYSP*SNLTSASAE*EGSISFSLNPTFF 113
W+ R K S L YW + ++P Q+ + +LY+ S LT + F+++P +
Sbjct: 97 WISRSKTSRELLYWWMGELPDQINEYSEQGISLYTSDSQLTQSL-----ETRFNISPCYL 151
Query: 112 SMSHK*ISLWLQKKVKKFGQ 53
H ++ V+K+ Q
Sbjct: 152 KFGHPLRRSGNKQMVRKYVQ 171
>ref|ZP_00311086.1| hypothetical protein Chut02000701 [Cytophaga hutchinsonii]
Length = 125
Score = 30.8 bits (68), Expect = 5.9
Identities = 17/55 (30%), Positives = 32/55 (57%), Gaps = 4/55 (7%)
Frame = -3
Query: 263 SSFLLVC---KKNSISSKKKGRCFYVVFPIVKSNVSFGR-VRGVNFIQLKSNFFF 111
S F+ VC K+ + K +G Y +FPI K+++ FG+ + G ++ + N++F
Sbjct: 20 SDFIKVCDTLKEAAYQLKARGISEYPIFPICKASLPFGQLLLGKTEVETQWNYYF 74
>emb|CAE58764.1| Hypothetical protein CBG01956 [Caenorhabditis briggsae]
Length = 325
Score = 30.8 bits (68), Expect = 5.9
Identities = 15/48 (31%), Positives = 25/48 (51%)
Frame = -1
Query: 145 SISFSLNPTFFSMSHK*ISLWLQKKVKKFGQEERSEDPPITSSRLRSN 2
S+ F + T F +S + + ++K K+ R DP +TS R+R N
Sbjct: 260 SVLFIVEVTLFILSLAVLGVLKRRKTKRRRSPRRERDPDVTSERIRLN 307
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 115
effective length of database: 411,753,648
effective search space used: 9882087552
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)