BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AU226442_RAFL14_34_H16.r
         (463 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25480.1  68415.m03051 expressed protein                       825   0.0  
At4g21800.2  68417.m03154 ATP-binding family protein contain...    36   0.25 
At4g21800.1  68417.m03153 ATP-binding family protein contain...    36   0.25 
At2g07180.1  68415.m00822 protein kinase, putative contains ...    36   0.25 
At5g22060.1  68418.m02569 DNAJ heat shock protein, putative ...    34   0.99 

>At2g25480.1 68415.m03051 expressed protein 
          Length = 1725

 Score =  825 bits (416), Expect = 0.0
 Identities = 449/456 (98%), Gaps = 3/456 (0%)
 Strand = Plus / Minus

                                                                        
Query: 3    gtagttgggctcagccctggacacagcaggatgaaacatctgctgtggcccccatttttt 62
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1723 gtagttgggctcagccctggacacagcaggatgaaacatctgctgtggcccccatttttt 1664

                                                                        
Query: 63   tccaccccaaaattcaccttttaagtataacatatcgaaatgaaaaaacagatcttgacc 122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1663 tccaccccaaaattcaccttttaagtataacatatcgaaatgaaaaaacagatcttgac- 1605

                                                                        
Query: 123  gacaaaccaaacagaatttaagcattacgaccaaagatcatgcgacgcaattgaagctct 182
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1604 gacaaaccaaacagaatttaagcattacgaccaaacatcatgcgacgcaattgaagctct 1545

                                                                        
Query: 183  catgaatgacatatagaagcaaccttgtggagcacaccatcaattttgcatctctgtctt 242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1544 catgaatgacatatagaagcaaccttgtggagcacaccatcaattttgcatctctgtctt 1485

                                                                        
Query: 243  tcattctttttgtccatcttctgattaaaaagtttgatttcatccatttttcactgtttc 302
            ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1484 tcactctttttgtccatcttctgattaaacagtttgatttcatccatttttcactgtttc 1425

                                                                        
Query: 303  ttgttactgttcctttttcgctccttaactagtacatgaatcataccgtaggttttaagg 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1424 ttgttactgttcctttttcgctccttaactagtacatgaatcataccgtaggttttaagg 1365

                                                                        
Query: 363  ctcaaccgcaacccacttccactaccatgtgagattcctttctgtcttcattcactcttg 422
            ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1364 ctcaaccgcaa-ccacttccactaccatgtgagattcgtttctgtcttcattcactcttg 1306

                                                
Query: 423  gagcttgttc-tgtgaatcttctgggtcagcattgt 457
            |||||||||| |||||||||||||||||||||||||
Sbjct: 1305 gagcttgttcttgtgaatcttctgggtcagcattgt 1270



>At4g21800.2 68417.m03154 ATP-binding family protein contains Pfam domain,
            PF03029: Conserved hypothetical ATP binding protein
          Length = 1759

 Score = 36.2 bits (18), Expect = 0.25
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 228  ttgcatctctgtctttca 245
            ||||||||||||||||||
Sbjct: 1124 ttgcatctctgtctttca 1107



>At4g21800.1 68417.m03153 ATP-binding family protein contains Pfam domain,
            PF03029: Conserved hypothetical ATP binding protein
          Length = 1740

 Score = 36.2 bits (18), Expect = 0.25
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 228  ttgcatctctgtctttca 245
            ||||||||||||||||||
Sbjct: 1105 ttgcatctctgtctttca 1088



>At2g07180.1 68415.m00822 protein kinase, putative contains protein kinase
           domain, Pfam:PF00069
          Length = 1692

 Score = 36.2 bits (18), Expect = 0.25
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 242 ttcattctttttgtccat 259
           ||||||||||||||||||
Sbjct: 770 ttcattctttttgtccat 753



>At5g22060.1 68418.m02569 DNAJ heat shock protein, putative strong similarity to
           SP|O60884 DnaJ homolog subfamily A member 2 (Dnj3) Homo
           sapiens, several plant DnaJ proteins from PGR; contains
           Pfam profiles PF00226 DnaJ domain, PF00684 DnaJ central
           domain (4 repeats), PF01556 DnaJ C terminal region
          Length = 1565

 Score = 34.2 bits (17), Expect = 0.99
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 207 ttgtggagcacaccatc 223
           |||||||||||||||||
Sbjct: 950 ttgtggagcacaccatc 966



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,062
Number of Sequences: 29161
Number of extensions: 15062
Number of successful extensions: 1120
Number of sequences better than 10.0: 16
length of query: 463
length of database: 44,058,232
effective HSP length: 17
effective length of query: 446
effective length of database: 43,562,495
effective search space: 19428872770
effective search space used: 19428872770
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)