BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226416_RAFL14_32_E02.r
(455 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56550.1 68414.m06503 expressed protein 878 0.0
At4g01750.1 68417.m00227 expressed protein T15B16.8 84 1e-15
At4g01220.2 68417.m00161 expressed protein 62 4e-09
At4g01220.1 68417.m00160 expressed protein 62 4e-09
At4g01770.1 68417.m00231 hypothetical protein similar to T1... 60 2e-08
>At1g56550.1 68414.m06503 expressed protein
Length = 1625
Score = 878 bits (443), Expect = 0.0
Identities = 450/451 (99%), Gaps = 1/451 (0%)
Strand = Plus / Plus
Query: 1 cggaaaactgattattgtaacattttttttttgtatcaaattgtaatgctttatgattcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggaaaactgattattgtaacattttttttttgtatcaaattgtaatgctttatgattcg 60
Query: 61 atctacacaacataaaacatgataactaattctgaccaaacacatatataataatgtagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atctacacaacataaaacatgataactaattctgaccaaacacatatataataatgtagg 120
Query: 121 ttacctcttcacgttgttatagtttaaacaaaacaataacgtagattgagtatctctaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttacctcttcacgttgttatagtttaaacaaaacaataacgtagattgagtatctctaca 180
Query: 181 cgttgtcattcctgaagagtgtcgttgactttttagtttttttgttcttttcctcatatt 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 181 cgttgtcattcctgaagagtgtcgttgactttttagtttttt-gttcttttcctcatatt 239
Query: 241 ttccaatttttgaatccgatcaaacaacttgtgaaaacttttctttccaaatttgtttcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttccaatttttgaatccgatcaaacaacttgtgaaaacttttctttccaaatttgtttcc 299
Query: 301 atggcgcagcagagccaacgtccaatctcaaaccgtcacatctctctcctcaaccgtaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atggcgcagcagagccaacgtccaatctcaaaccgtcacatctctctcctcaaccgtaac 359
Query: 361 ggtctcatcctccttctccttctagctctctttgttatcctcggtgtattcttacctttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggtctcatcctccttctccttctagctctctttgttatcctcggtgtattcttacctttg 419
Query: 421 acaaaatcttccttgttcatgtttccaaaca 451
|||||||||||||||||||||||||||||||
Sbjct: 420 acaaaatcttccttgttcatgtttccaaaca 450
>At4g01750.1 68417.m00227 expressed protein T15B16.8
Length = 1104
Score = 83.8 bits (42), Expect = 1e-15
Identities = 83/96 (86%), Gaps = 3/96 (3%)
Strand = Plus / Plus
Query: 323 caatctcaaaccgtcacatctctctcctcaaccgtaacggtctcatcctccttctccttc 382
||||||||||||||| ||||| |||||| | ||| ||||||||| |||||| ||||||
Sbjct: 68 caatctcaaaccgtcccatctttctccttagccgcaacggtctc---ctccttgtccttc 124
Query: 383 tagctctctttgttatcctcggtgtattcttacctt 418
| |||||||| || |||||||||||||||||||||
Sbjct: 125 tcgctctcttccttctcctcggtgtattcttacctt 160
>At4g01220.2 68417.m00161 expressed protein
Length = 1478
Score = 61.9 bits (31), Expect = 4e-09
Identities = 78/94 (82%), Gaps = 6/94 (6%)
Strand = Plus / Plus
Query: 323 caatctcaaaccgtcacatctctctcctcaaccgtaacggtctcatcctccttctccttc 382
|||||||||| |||| |||||||| |||| ||| ||||||||| |||||||||||
Sbjct: 291 caatctcaaatcgtccaatctctctactcagccgcaacggtctcctcctccttctc---- 346
Query: 383 tagctctctttgttatcctcggtgtattcttacc 416
|||||| | ||||||||||| |||||||||||
Sbjct: 347 --gctctcctcgttatcctcggcgtattcttacc 378
>At4g01220.1 68417.m00160 expressed protein
Length = 1506
Score = 61.9 bits (31), Expect = 4e-09
Identities = 78/94 (82%), Gaps = 6/94 (6%)
Strand = Plus / Plus
Query: 323 caatctcaaaccgtcacatctctctcctcaaccgtaacggtctcatcctccttctccttc 382
|||||||||| |||| |||||||| |||| ||| ||||||||| |||||||||||
Sbjct: 291 caatctcaaatcgtccaatctctctactcagccgcaacggtctcctcctccttctc---- 346
Query: 383 tagctctctttgttatcctcggtgtattcttacc 416
|||||| | ||||||||||| |||||||||||
Sbjct: 347 --gctctcctcgttatcctcggcgtattcttacc 378
>At4g01770.1 68417.m00231 hypothetical protein similar to T15B16.9
Length = 1086
Score = 60.0 bits (30), Expect = 2e-08
Identities = 59/68 (86%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 323 caatctcaaaccgtcacatctctctcctcaaccgtaacggtctcatcctccttctccttc 382
|||||||| |||||| |||||||||||| | ||| ||||||| |||||||||||||||
Sbjct: 65 caatctcagaccgtcccatctctctccttagccgcaacggtc---tcctccttctccttc 121
Query: 383 tagctctc 390
| ||||||
Sbjct: 122 tcgctctc 129
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,962
Number of Sequences: 29161
Number of extensions: 21962
Number of successful extensions: 2068
Number of sequences better than 10.0: 73
length of query: 455
length of database: 44,058,232
effective HSP length: 17
effective length of query: 438
effective length of database: 43,562,495
effective search space: 19080372810
effective search space used: 19080372810
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)