BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AU226399_RAFL14_30_N24.r
         (361 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37690.1  68417.m05332 galactosyl transferase GMA12/MNN10...   660   0.0  
At4g35785.2  68417.m05083 transformer serine/arginine-rich r...    36   0.19 
At4g35785.1  68417.m05082 transformer serine/arginine-rich r...    36   0.19 
At5g02230.2  68418.m00145 haloacid dehalogenase-like hydrola...    34   0.76 
At5g02230.1  68418.m00144 haloacid dehalogenase-like hydrola...    34   0.76 

>At4g37690.1 68417.m05332 galactosyl transferase GMA12/MNN10 family protein low
           similarity to alpha-1,2-galactosyltransferase,
           Schizosaccharomyces pombe [SP|Q09174]
          Length = 1708

 Score =  660 bits (333), Expect = 0.0
 Identities = 354/361 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaatctaatttgagtatttattccttgtaaatttctgaattgccattcttttaaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaaatctaatttgagtatttattccttgtaaatttctgaattgccattcttttaaaata 60

                                                                       
Query: 61  atgatacaatcctgtccattcacaaccttacttcaaagtcttaaactttccataaatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 61  atgatacaatcctgtccattcacaaccttacttcaaagtcttacactttccataaatgtt 120

                                                                       
Query: 121 tctttaatacctttttaattaggagaaaaagtgaaaactaaaaacttatgctaatttggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 121 tctttaatacctttttaattaggagaaaaagtgaaaactaaaaacttatgctaattttgt 180

                                                                       
Query: 181 atcagaattataaatatttcccattctctaaccataaatttacgttgattaaatcctcac 240
           |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 181 atcagaattataaatatttcccattctctaaccatacatttacgttgactaaatcctcac 240

                                                                       
Query: 241 atttaagacaataaacccttaatcagaaaagattgtttctttactttaatcacccaactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atttaagacaataaacccttaatcagaaaagattgtttctttactttaatcacccaactg 300

                                                                       
Query: 301 ttttcagggttttactgaattttctcattttttataatcacttcattgtagtttcactga 360
           ||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 301 ttttcagtgttttactgaattttctcatcttttataatcacttcattgtagttttactga 360

            
Query: 361 a 361
           |
Sbjct: 361 a 361



>At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonucleoprotein,
           putative similar to transformer-SR ribonucleoprotein
           [Nicotiana tabacum] gi|1781299|emb|CAA70700
          Length = 1070

 Score = 36.2 bits (18), Expect = 0.19
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 149 aagtgaaaactaaaaact 166
           ||||||||||||||||||
Sbjct: 980 aagtgaaaactaaaaact 997



>At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonucleoprotein,
           putative similar to transformer-SR ribonucleoprotein
           [Nicotiana tabacum] gi|1781299|emb|CAA70700
          Length = 1045

 Score = 36.2 bits (18), Expect = 0.19
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 149 aagtgaaaactaaaaact 166
           ||||||||||||||||||
Sbjct: 955 aagtgaaaactaaaaact 972



>At5g02230.2 68418.m00145 haloacid dehalogenase-like hydrolase family protein
            contains InterPro accession IPR005834: Haloacid
            dehalogenase-like hydrolase
          Length = 1038

 Score = 34.2 bits (17), Expect = 0.76
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 319  attttctcattttttat 335
            |||||||||||||||||
Sbjct: 1027 attttctcattttttat 1011



>At5g02230.1 68418.m00144 haloacid dehalogenase-like hydrolase family protein
            contains InterPro accession IPR005834: Haloacid
            dehalogenase-like hydrolase
          Length = 1073

 Score = 34.2 bits (17), Expect = 0.76
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 319  attttctcattttttat 335
            |||||||||||||||||
Sbjct: 1062 attttctcattttttat 1046



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,712
Number of Sequences: 29161
Number of extensions: 11712
Number of successful extensions: 918
Number of sequences better than 10.0: 33
length of query: 361
length of database: 44,058,232
effective HSP length: 17
effective length of query: 344
effective length of database: 43,562,495
effective search space: 14985498280
effective search space used: 14985498280
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)