BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AU226380_RAFL14_29_L19.r
         (409 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70000.1  68414.m08056 DNA-binding family protein contain...   765   0.0  
At1g22030.1  68414.m02756 expressed protein                        40   0.014
At1g22810.1  68414.m02849 AP2 domain-containing transcriptio...    38   0.056
At5g41400.1  68418.m05030 zinc finger (C3HC4-type RING finge...    36   0.22 
At2g30840.1  68415.m03760 2-oxoglutarate-dependent dioxygena...    36   0.22 

>At1g70000.1 68414.m08056 DNA-binding family protein contains Pfam domains,
            PF00249: Myb-like DNA-binding domain and PF00098: Zinc
            knuckle
          Length = 1246

 Score =  765 bits (386), Expect = 0.0
 Identities = 407/410 (99%), Gaps = 3/410 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    agaaaacggcaaattacgtggaaaagtcttaccaaaaaaaaaagatagaaaaagcatatg 60
            ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1246 agaaaacggcaaattac-tggaaaagtcttaccaaaaaaaaa-gatagaaaaagcatatg 1189

                                                                        
Query: 61   agatacacttaaccttaacccaataaccattctgtttaaacttttcaaaagacacatcta 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1188 agatacacttaaccttaacccaataaccattctgtttaaacttttcaaaagacacatcta 1129

                                                                        
Query: 121  aactatcttaagcttgaagtcgtcttcacttctgaatctgatcaagtcttgaccaaaaca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 aactatcttaagcttgaagtcgtcttcacttctgaatctgatcaagtcttgaccaaaaca 1069

                                                                        
Query: 181  acacagagactacctgttgttttacatcatacaacaacaaaaacgacaagtcgtttcccc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 acacagagactacctgttgttttacatcatacaacaacaaaaacgacaagtcgtttcccc 1009

                                                                        
Query: 241  caaaaagagcaaaaaaacatgtacacactaattcaaactt-aaaactcacttgattctga 299
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1008 caaaaagagcaaaaaaacatgtacacactaattcaaacttaaaaactcacttgattctga 949

                                                                        
Query: 300  tcaaagtatctaattagcctaattctcaaatttcaaattaatcatcatccagatcttatc 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948  tcaaagtatctaattagcctaattctcaaatttcaaattaatcatcatccagatcttatc 889

                                                              
Query: 360  ttatacaatataaattaattaaaacattatcttcttcatcaagccactcc 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888  ttatacaatataaattaattaaaacattatcttcttcatcaagccactcc 839



>At1g22030.1 68414.m02756 expressed protein
          Length = 1316

 Score = 40.1 bits (20), Expect = 0.014
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 320  aattctcaaatttcaaatta 339
            ||||||||||||||||||||
Sbjct: 1309 aattctcaaatttcaaatta 1290



>At1g22810.1 68414.m02849 AP2 domain-containing transcription factor, putative
           Contains similarity to transcription factor (TINY)
           isolog T02O04.22 gb|2062174 from A. thaliana BAC
           gb|AC001645
          Length = 987

 Score = 38.2 bits (19), Expect = 0.056
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 205 catcatacaacaacaaaaa 223
           |||||||||||||||||||
Sbjct: 50  catcatacaacaacaaaaa 68



>At5g41400.1 68418.m05030 zinc finger (C3HC4-type RING finger) family protein
           similar to RING-H2 finger protein RHA1a [Arabidopsis
           thaliana] GI:3790554; contains Pfam profile PF00097:
           Zinc finger, C3HC4 type (RING finger)
          Length = 801

 Score = 36.2 bits (18), Expect = 0.22
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 34  aaaaaaaaaagatagaaa 51
           ||||||||||||||||||
Sbjct: 660 aaaaaaaaaagatagaaa 643



>At2g30840.1 68415.m03760 2-oxoglutarate-dependent dioxygenase, putative similar
           to 2A6 (GI:599622) and tomato ethylene synthesis
           regulatory protein E8 (SP|P10967)
          Length = 1256

 Score = 36.2 bits (18), Expect = 0.22
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 77  aacccaataaccattctg 94
           ||||||||||||||||||
Sbjct: 799 aacccaataaccattctg 782



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,571
Number of Sequences: 29161
Number of extensions: 20571
Number of successful extensions: 2148
Number of sequences better than 10.0: 68
length of query: 409
length of database: 44,058,232
effective HSP length: 17
effective length of query: 392
effective length of database: 43,562,495
effective search space: 17076498040
effective search space used: 17076498040
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)