BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226354_RAFL14_27_D04.r
(438 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g08890.2 68416.m01035 expressed protein contains Pfam pr... 842 0.0
At3g08900.1 68416.m01036 reversibly glycosylated polypeptid... 618 e-177
At3g08890.1 68416.m01034 expressed protein contains Pfam pr... 117 8e-26
At3g02230.1 68416.m00204 reversibly glycosylated polypeptid... 105 3e-22
At5g15650.1 68418.m01831 reversibly glycosylated polypeptid... 86 3e-16
>At3g08890.2 68416.m01035 expressed protein contains Pfam profile PF04398:
Protein of unknown function, DUF538
Length = 966
Score = 842 bits (425), Expect = 0.0
Identities = 434/437 (99%)
Strand = Plus / Minus
Query: 2 cttatcttgctttggtgcattggttatactgtaataccgttacatttgtccaataatata 61
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 cttatcttgcttttgtgcattggttatactgtaataccgttacatttgtccaataatata 906
Query: 62 ggtgatatgtgaccacatgggatggggagtgaagacgggtttgccttacatatggcacag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ggtgatatgtgaccacatgggatggggagtgaagacgggtttgccttacatatggcacag 846
Query: 122 caaagccagcaacccattcgtgaacctgaaaaaggaatacaacggaatattttggcagga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 caaagccagcaacccattcgtgaacctgaaaaaggaatacaacggaatattttggcagga 786
Query: 182 agaggcgattccgttctttcaatccgtgactcttcctaaagagtgcacttcggtgcagca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 agaggcgattccgttctttcaatccgtgactcttcctaaagagtgcacttcggtgcagca 726
Query: 242 atgctacctcgagctggccaagctcgtgagagagaaacttgggaaggttgatccttactt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 atgctacctcgagctggccaagctcgtgagagagaaacttgggaaggttgatccttactt 666
Query: 302 catcacacttgcaactggaatggtcacctggatcgaagcttgggaggagcttaactccgg 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 catcacacttgcaactggaatggtcacctggatcgaagcttgggaggagcttaactccgc 606
Query: 362 ggagggaactgaggcagaaaaacagagctagaatttatcaatctcaacgccatctcttaa 421
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ggagggaactgaggcagcaaaacagagctagaatttatcaatctcaacgccatctcttaa 546
Query: 422 aacctcataagcatctc 438
|||||||||||||||||
Sbjct: 545 aacctcataagcatctc 529
>At3g08900.1 68416.m01036 reversibly glycosylated polypeptide-3 (RGP3) nearly
identical to reversibly glycosylated polypeptide-3
[Arabidopsis thaliana] GI:11863238; contains
non-consensus GA-donor splice site at intron 2
Length = 1350
Score = 618 bits (312), Expect = e-177
Identities = 315/316 (99%)
Strand = Plus / Plus
Query: 61 aggtgatatgtgaccacatgggatggggagtgaagacgggtttgccttacatatggcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aggtgatatgtgaccacatgggatggggagtgaagacgggtttgccttacatatggcaca 808
Query: 121 gcaaagccagcaacccattcgtgaacctgaaaaaggaatacaacggaatattttggcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gcaaagccagcaacccattcgtgaacctgaaaaaggaatacaacggaatattttggcagg 868
Query: 181 aagaggcgattccgttctttcaatccgtgactcttcctaaagagtgcacttcggtgcagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 aagaggcgattccgttctttcaatccgtgactcttcctaaagagtgcacttcggtgcagc 928
Query: 241 aatgctacctcgagctggccaagctcgtgagagagaaacttgggaaggttgatccttact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 aatgctacctcgagctggccaagctcgtgagagagaaacttgggaaggttgatccttact 988
Query: 301 tcatcacacttgcaactggaatggtcacctggatcgaagcttgggaggagcttaactccg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 tcatcacacttgcaactggaatggtcacctggatcgaagcttgggaggagcttaactccg 1048
Query: 361 gggagggaactgaggc 376
|||||||||||||||
Sbjct: 1049 cggagggaactgaggc 1064
>At3g08890.1 68416.m01034 expressed protein contains Pfam profile PF04398:
Protein of unknown function, DUF538
Length = 796
Score = 117 bits (59), Expect = 8e-26
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 380 aaaacagagctagaatttatcaatctcaacgccatctcttaaaacctcataagcatctc 438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aaaacagagctagaatttatcaatctcaacgccatctcttaaaacctcataagcatctc 529
>At3g02230.1 68416.m00204 reversibly glycosylated polypeptide-1 (RGP1) identical
to reversibly glycosylated polypeptide-1 (AtRGP)
[Arabidopsis thaliana] GI:2317729
Length = 1385
Score = 105 bits (53), Expect = 3e-22
Identities = 104/121 (85%)
Strand = Plus / Plus
Query: 61 aggtgatatgtgaccacatgggatggggagtgaagacgggtttgccttacatatggcaca 120
||||||| |||||||| |||||| |||||||||||| |||||||| ||||| | ||||
Sbjct: 829 aggtgatctgtgaccatttgggattgggagtgaagacaggtttgccctacatttaccaca 888
Query: 121 gcaaagccagcaacccattcgtgaacctgaaaaaggaatacaacggaatattttggcagg 180
|||||||||||||||| || |||||| |||| ||||| ||||| ||||| || |||||||
Sbjct: 889 gcaaagccagcaacccgtttgtgaacttgaagaaggagtacaagggaatcttctggcagg 948
Query: 181 a 181
|
Sbjct: 949 a 949
Score = 48.1 bits (24), Expect = 6e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 321 atggtcacctggatcgaagcttgggaggagcttaac 356
|||||||| ||||| ||||||||||| |||||||||
Sbjct: 1089 atggtcacttggattgaagcttgggatgagcttaac 1124
>At5g15650.1 68418.m01831 reversibly glycosylated polypeptide-2 (RGP2) identical
to reversibly glycosylated polypeptide-2 [Arabidopsis
thaliana] GI:2317731
Length = 1530
Score = 85.7 bits (43), Expect = 3e-16
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 61 aggtgatatgtgaccacatgggatggggagtgaagacgggtttgccttacatatggcaca 120
||||||| ||||||||| || | | |||||||||||| ||||| || || || | ||||
Sbjct: 807 aggtgatctgtgaccacttgagcttgggagtgaagaccggtttaccgtatatctaccaca 866
Query: 121 gcaaagccagcaacccattcgtgaacctgaaaaaggaatacaacggaatattttggcagg 180
||||||| |||||||| || || |||||||| ||||||||||| ||||| || |||||||
Sbjct: 867 gcaaagcgagcaacccttttgttaacctgaagaaggaatacaagggaatcttctggcagg 926
Query: 181 aagaggcgattccgttctt 199
| ||| |||||||||||
Sbjct: 927 aggagatcattccgttctt 945
Score = 40.1 bits (20), Expect = 0.015
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 321 atggtcacctggatcgaagcttgggaggagcttaac 356
||||| || ||||| ||||||||||| |||||||||
Sbjct: 1067 atggttacatggattgaagcttgggatgagcttaac 1102
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,225
Number of Sequences: 29161
Number of extensions: 11225
Number of successful extensions: 807
Number of sequences better than 10.0: 26
length of query: 438
length of database: 44,058,232
effective HSP length: 17
effective length of query: 421
effective length of database: 43,562,495
effective search space: 18339810395
effective search space used: 18339810395
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)