BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU225969_RAFL14_02_B09.r
(219 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g58280.2 68414.m06630 expressed protein 418 e-117
At1g58280.1 68414.m06629 expressed protein 418 e-117
At3g27520.1 68416.m03440 expressed protein 34 0.45
At4g32375.1 68417.m04610 glycoside hydrolase family 28 prot... 32 1.8
At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative... 32 1.8
>At1g58280.2 68414.m06630 expressed protein
Length = 1183
Score = 418 bits (211), Expect = e-117
Identities = 218/219 (99%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 1 ggggtcaaaaaattcccctcgttgcttaatcgagataacatttaagtgtgaatccgtagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1183 ggggtcaaaaaattcccctcgttgcttaatcgagataacatttaagtgtgaatccgtagg 1124
Query: 61 atacggtaacgttaaataaaatagttacgtctaactccattttctattccattgtataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1123 atacggtaacgttaaataaaatagttacgtctaactccattttctattccattgtataga 1064
Query: 121 aatatacagctttgagattcatataagattaacataatacatataacctacttctgatca 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1063 aatatacagctttgagattcatataagattaacataatacatataa-ctacttctgatca 1005
Query: 181 gcaatatcactagaagcatcttctccggtaagtattgtt 219
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 gcaatatcactagaagcatcttctccggtaagtattgtt 966
>At1g58280.1 68414.m06629 expressed protein
Length = 1068
Score = 418 bits (211), Expect = e-117
Identities = 218/219 (99%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 1 ggggtcaaaaaattcccctcgttgcttaatcgagataacatttaagtgtgaatccgtagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 ggggtcaaaaaattcccctcgttgcttaatcgagataacatttaagtgtgaatccgtagg 1009
Query: 61 atacggtaacgttaaataaaatagttacgtctaactccattttctattccattgtataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 atacggtaacgttaaataaaatagttacgtctaactccattttctattccattgtataga 949
Query: 121 aatatacagctttgagattcatataagattaacataatacatataacctacttctgatca 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 948 aatatacagctttgagattcatataagattaacataatacatataa-ctacttctgatca 890
Query: 181 gcaatatcactagaagcatcttctccggtaagtattgtt 219
|||||||||||||||||||||||||||||||||||||||
Sbjct: 889 gcaatatcactagaagcatcttctccggtaagtattgtt 851
>At3g27520.1 68416.m03440 expressed protein
Length = 999
Score = 34.2 bits (17), Expect = 0.45
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 191 tagaagcatcttctccg 207
|||||||||||||||||
Sbjct: 462 tagaagcatcttctccg 446
>At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:4325090;
contains Pfam profile PF00295: Polygalacturonase
(pectinase)
Length = 1461
Score = 32.2 bits (16), Expect = 1.8
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 95 ctccattttctattccattg 114
||||||||||| ||||||||
Sbjct: 706 ctccattttctgttccattg 687
>At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative / histidine--tRNA
ligase, putative similar to SP|P12081 Histidyl-tRNA
synthetase (EC 6.1.1.21) (Histidine--tRNA ligase)
(HisRS) {Homo sapiens}; contains Pfam profiles PF00587:
tRNA synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain
Length = 1669
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 174 ctgatcagcaatatca 189
||||||||||||||||
Sbjct: 318 ctgatcagcaatatca 303
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5469
Number of Sequences: 29161
Number of extensions: 5469
Number of successful extensions: 428
Number of sequences better than 10.0: 27
length of query: 219
length of database: 44,058,232
effective HSP length: 16
effective length of query: 203
effective length of database: 43,591,656
effective search space: 8849106168
effective search space used: 8849106168
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)