BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226253_RAFL14_19_A12.r
(431 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17285.1 68414.m02106 expressed protein 696 0.0
At1g17300.1 68414.m02109 expressed protein 137 9e-32
At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-con... 60 2e-08
At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-con... 60 2e-08
At3g24600.1 68416.m03090 hypothetical protein 36 0.23
>At1g17285.1 68414.m02106 expressed protein
Length = 534
Score = 696 bits (351), Expect = 0.0
Identities = 413/431 (95%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 1 aagattaaaagatgagttcatatatttcaagtagattaaagcattaaaagcacacatgtt 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 534 aagattaaaagatgagttcatatatttcaagtagattacagcattaaaagcacacatgtc 475
Query: 61 taggtacctattctacaaaaaaaacgaaagtagaggatttaaataaggacaaaaaaagaa 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 474 taggtacctattctacaaaaaaaacgaaagtagaggatctaaataaggacaaaaaaagaa 415
Query: 121 ctggaattttaaggttttattgatgttgtgatctgctgttgtttcctacttggctttacc 180
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
Sbjct: 414 ctggaattttaaggttttcttgatgttgtgatctgctgttgtttcctactt-gctttaac 356
Query: 181 atctaccggtggattaaacttgtcctgtatagggtttgagccactccttgggattcttct 240
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 355 atctaccggtggattacacttgttctgtatagggtttgagccactccttgggattcttct 296
Query: 241 gaagcctatcattttctcccttaagtggctctttcttcatctcctggcttaaaggaaaat 300
|||| |||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct: 295 gaag-ctatcattttctcccttaagtggctctttcttcatctccttgcttacaggcaaat 237
Query: 301 ctctaacaggttgaatcgaatgtgtaatggttaacagagaacgtccttctacactatact 360
|||| |||| |||| |||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 236 ctctcacagcttgactcgaatgtgtcatcgttaacagagaacgtccttctacactatact 177
Query: 361 tgctgctaaagaaagctacaagtaacagaaccagagccactgaacaggatctcttcattc 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 176 tgctgctaaagaaagctacaagtaacagaaccagagccactgaacagcatctcttcattc 117
Query: 421 tgagttctctt 431
|||||||||||
Sbjct: 116 tgagttctctt 106
>At1g17300.1 68414.m02109 expressed protein
Length = 351
Score = 137 bits (69), Expect = 9e-32
Identities = 109/121 (90%), Gaps = 1/121 (0%)
Strand = Plus / Minus
Query: 205 ctgtatagggtttgagccactccttgggattcttctgaagcctatcattttctcccttaa 264
|||||||||||||||||||| ||||||||||||||| |||| |||| |||||||||||||
Sbjct: 123 ctgtatagggtttgagccaccccttgggattcttcttaagc-tatctttttctcccttaa 65
Query: 265 gtggctctttcttcatctcctggcttaaaggaaaatctctaacaggttgaatcgaatgtg 324
||||||||||||||||||||| ||||| | | |||||||| ||| |||| |||||||||
Sbjct: 64 gtggctctttcttcatctccttgcttacatgcaaatctctcgcagcttgactcgaatgtg 5
Query: 325 t 325
|
Sbjct: 4 t 4
>At1g72320.3 68414.m08362 pumilio/Puf RNA-binding domain-containing protein
contains Pfam profile: PF00806 Pumilio-family RNA binding
domains (aka PUM-HD, Pumilio homology domain) (5 copies)
Length = 2727
Score = 60.0 bits (30), Expect = 2e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 348 tctacactatacttgctgctaaagaaagctacaagtaacaga 389
|||||| |||||||||||||||| ||||||| ||||||||||
Sbjct: 2482 tctacattatacttgctgctaaacaaagctagaagtaacaga 2523
Score = 40.1 bits (20), Expect = 0.015
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 218 gagccactccttgggattcttctgaagc 245
|||||| ||||||||||||||| |||||
Sbjct: 2344 gagccagtccttgggattcttcggaagc 2371
>At1g72320.2 68414.m08361 pumilio/Puf RNA-binding domain-containing protein
contains Pfam profile: PF00806 Pumilio-family RNA binding
domains (aka PUM-HD, Pumilio homology domain) (5 copies)
Length = 2736
Score = 60.0 bits (30), Expect = 2e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 348 tctacactatacttgctgctaaagaaagctacaagtaacaga 389
|||||| |||||||||||||||| ||||||| ||||||||||
Sbjct: 2491 tctacattatacttgctgctaaacaaagctagaagtaacaga 2532
Score = 40.1 bits (20), Expect = 0.015
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 218 gagccactccttgggattcttctgaagc 245
|||||| ||||||||||||||| |||||
Sbjct: 2353 gagccagtccttgggattcttcggaagc 2380
>At3g24600.1 68416.m03090 hypothetical protein
Length = 1521
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 268 gctctttcttcatctcct 285
||||||||||||||||||
Sbjct: 1442 gctctttcttcatctcct 1459
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,357
Number of Sequences: 29161
Number of extensions: 15357
Number of successful extensions: 1311
Number of sequences better than 10.0: 31
length of query: 431
length of database: 44,058,232
effective HSP length: 17
effective length of query: 414
effective length of database: 43,562,495
effective search space: 18034872930
effective search space used: 18034872930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)