BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226226_RAFL14_16_G16.r
(461 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41000.1 68415.m05064 DNAJ heat shock N-terminal domain-... 874 0.0
At1g61770.1 68414.m06966 DNAJ heat shock N-terminal domain-... 36 0.25
At1g14510.1 68414.m01720 PHD finger family protein contains... 36 0.25
At5g66470.1 68418.m08382 expressed protein 34 0.98
At5g41800.1 68418.m05089 amino acid transporter family prot... 34 0.98
>At2g41000.1 68415.m05064 DNAJ heat shock N-terminal domain-containing protein
similar to SP|O75190 DnaJ homolog subfamily B member 6
(Heat shock protein J2) Homo sapiens; contains Pfam
profile PF00226 DnaJ domain
Length = 1176
Score = 874 bits (441), Expect = 0.0
Identities = 457/461 (99%), Gaps = 1/461 (0%)
Strand = Plus / Minus
Query: 1 acaaagccaaaataagtttttgttttattacaacatcccatctctggttgcccattatgc 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1176 acaaagccaaaataagtttttgttttattacaacatcccatctctgcttgcccattatgc 1117
Query: 61 attcaaatacaattgcgtgtactaggacttctctcataatcgattattatctggagagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 attcaaatacaattgcgtgtactaggacttctctcataatcgattattatctggagagat 1057
Query: 121 gaatatttgttacaagaacataaaaacctatctattacacttcatgataaattagggttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 gaatatttgttacaagaacataaaaacctatctattacacttcatgataaattagggttt 997
Query: 181 tcaaccttctcatggttcatttttgataaatttacttacattttcacatctcctgtctaa 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 tcaac-ttctcatggttcatttttgataaatttacttacattttcacatctcctgtctaa 938
Query: 241 gagagtgaaatctataaaagtccctagcaatgacccacacaaacccaccaggcccacaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 gagagtgaaatctataaaagtccctagcaatgacccacacaaacccaccaggcccacaga 878
Query: 301 agcagcttaaaaagtcaaagtctttagaagtacctttgattcttctctttcacccttcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 agcagcttaaaaagtcaaagtctttagaagtacctttgattcttctctttcacccttcat 818
Query: 361 ctttatgtgactttgatttctcgattgattccattgcttcttcgaatgatttccctgagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ctttatgtgactttgatttctcgattgattccattgcttcttcgaatgatttccctgagt 758
Query: 421 tacgcattttccatagtgtttctccgctggtatcactcgca 461
|||||||||||||||||||||||||||| |||||| |||||
Sbjct: 757 tacgcattttccatagtgtttctccgcttgtatcaatcgca 717
>At1g61770.1 68414.m06966 DNAJ heat shock N-terminal domain-containing protein
similar to SP|Q9UBS4 DnaJ homolog subfamily B member 11
precursor Homo sapiens; contains Pfam profile PF00226
DnaJ domain
Length = 1195
Score = 36.2 bits (18), Expect = 0.25
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 334 ctttgattcttctctttc 351
||||||||||||||||||
Sbjct: 90 ctttgattcttctctttc 107
>At1g14510.1 68414.m01720 PHD finger family protein contains Pfam domain,
PF00628: PHD-finger
Length = 1314
Score = 36.2 bits (18), Expect = 0.25
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 241 gagagtgaaatctataaa 258
||||||||||||||||||
Sbjct: 120 gagagtgaaatctataaa 103
>At5g66470.1 68418.m08382 expressed protein
Length = 1588
Score = 34.2 bits (17), Expect = 0.98
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 169 aaattagggttttcaac 185
|||||||||||||||||
Sbjct: 137 aaattagggttttcaac 121
>At5g41800.1 68418.m05089 amino acid transporter family protein similar to amino
acid permease 1 [Nicotiana sylvestris] GI:976402;
belongs to INTERPRO:IPR002422 amino acid/polyamine
transporter, family II
Length = 1473
Score = 34.2 bits (17), Expect = 0.98
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 234 tgtctaagagagtgaaa 250
|||||||||||||||||
Sbjct: 541 tgtctaagagagtgaaa 525
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,207
Number of Sequences: 29161
Number of extensions: 18207
Number of successful extensions: 1543
Number of sequences better than 10.0: 22
length of query: 461
length of database: 44,058,232
effective HSP length: 17
effective length of query: 444
effective length of database: 43,562,495
effective search space: 19341747780
effective search space used: 19341747780
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)