BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226223_RAFL14_16_D08.r
(484 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40316.1 68415.m04968 expressed protein 886 0.0
At5g63130.1 68418.m07926 octicosapeptide/Phox/Bem1p (PB1) d... 34 1.0
At3g07020.2 68416.m00834 UDP-glucose:sterol glucosyltransfe... 34 1.0
At2g32290.1 68415.m03947 beta-amylase, putative / 1,4-alpha... 34 1.0
At2g30280.1 68415.m03686 expressed protein 34 1.0
>At2g40316.1 68415.m04968 expressed protein
Length = 1791
Score = 886 bits (447), Expect = 0.0
Identities = 473/479 (98%), Gaps = 2/479 (0%)
Strand = Plus / Minus
Query: 1 aaatcggctcaaatttaaccgagatcactaaaagaacaatctggttcgtggatttttggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1513 aaatcggctcaaatttaaccgagatcactaaaagaacaatctggttcgtggatttttggt 1454
Query: 61 caattgcaacatctctatcctaaacattgatcactcgcctatcagaaaactcactgaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1453 caattgcaacatctctatcctaaacattgatcactcgcctatcagaaaactcactgaaag 1394
Query: 121 aaaagagatatccacttatccaacgccaagcggatgcaaaatgtggtaaaaaatcaacac 180
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1393 aaaagagatatccacttatccaacgccaagcggatgcaaaatgtgctaaaacatcaacac 1334
Query: 181 atcggttaccattactcaaaatcagcatcaagaaactgaaacaatctccaaagagcaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1333 atcggttaccattactcaaaatcagcatcaagaaactgaaacaatctccaaagagcaaac 1274
Query: 241 acacgaaatgggaaaggctgccagattgcaatggccttgacattgtttctatccaatgaa 300
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 1273 acacgaaatgggaaaggctg-cagattgcaatgg-cttgacattgtttctatccaatgaa 1216
Query: 301 caagattcttttgtttctacagggatccatgacataacaagctgaaaaggagaggcacct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1215 caagattcttttgtttctacagggatccatgacataacaagctgaaaaggagaggcacct 1156
Query: 361 tataacttgcagtcatataatggccaaaagagtagtcagggtataacaatctagcggcgt 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1155 tataacttgcagtcatataatggccaaaagagtactcagggtataacaatctagcggcgt 1096
Query: 421 ttgcaattggttgaaccagtaaaggaaagtttggggatgtgtctccagaccatggatca 479
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 ttgcaattggttgaaccagtcaaggaaagtttggggatgtgtctccagaccatggatca 1037
>At5g63130.1 68418.m07926 octicosapeptide/Phox/Bem1p (PB1) domain-containing
protein contains Pfam profile PF00564: PB1 domain
Length = 1075
Score = 34.2 bits (17), Expect = 1.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 168 aaaaaatcaacacatcg 184
|||||||||||||||||
Sbjct: 783 aaaaaatcaacacatcg 767
>At3g07020.2 68416.m00834 UDP-glucose:sterol glucosyltransferase (UGT80A2)
identical to UDP-glucose:sterol glucosyltransferase
[Arabidopsis thaliana] GI:2462931; contains Pfam profile:
PF03033 glycosyltransferase family 28 N-terminal domain
Length = 2493
Score = 34.2 bits (17), Expect = 1.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 208 tcaagaaactgaaacaa 224
|||||||||||||||||
Sbjct: 2305 tcaagaaactgaaacaa 2289
>At2g32290.1 68415.m03947 beta-amylase, putative / 1,4-alpha-D-glucan
maltohydrolase, putative similar to beta-amylase
GI:13560977 from [Castanea crenata]
Length = 1853
Score = 34.2 bits (17), Expect = 1.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 208 tcaagaaactgaaacaa 224
|||||||||||||||||
Sbjct: 337 tcaagaaactgaaacaa 353
>At2g30280.1 68415.m03686 expressed protein
Length = 1356
Score = 34.2 bits (17), Expect = 1.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 437 cagtaaaggaaagtttg 453
|||||||||||||||||
Sbjct: 419 cagtaaaggaaagtttg 435
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,189
Number of Sequences: 29161
Number of extensions: 16189
Number of successful extensions: 1328
Number of sequences better than 10.0: 24
length of query: 484
length of database: 44,058,232
effective HSP length: 17
effective length of query: 467
effective length of database: 43,562,495
effective search space: 20343685165
effective search space used: 20343685165
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)