BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226220_RAFL14_16_B20.r
(475 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finge... 886 0.0
At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finge... 52 4e-06
At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finge... 38 0.065
At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finge... 38 0.065
At5g54250.2 68418.m06758 cyclic nucleotide-regulated ion ch... 36 0.26
>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profile: PF00097 Zinc finger, C3HC4 type
(RING finger)
Length = 1164
Score = 886 bits (447), Expect = 0.0
Identities = 471/475 (99%), Gaps = 3/475 (0%)
Strand = Plus / Plus
Query: 1 gaattctttcattaagcaaatccaatgttttcgactctctaaattcaatgcacgaggtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaattctttcattaagcaaatccaatgttttcgactctctaaattcaatgcacgaggtaa 60
Query: 61 catttcgatgcatggagttaaatgtcagcgttaaagagccgtagtaactcgttagccgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catttcgatgcatggagttaaatgtcagcgttaaagagccgtagtaactcgttagccgga 120
Query: 121 ctaagtctagacgctgtgcttggcggcgagatccttatagaaccgccatctctaccgtcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctaagtctagacgctgtgcttggcggcgagatccttatagaaccgccatctctaccgtcg 180
Query: 181 ccaccacctttaccatcaaaatctcttgtaccgcaccgtccaacaagccaaacccttttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccaccacctttaccatcaaaatctcttgtaccgcaccgtccaacaagccaaacccttttt 240
Query: 241 gatatcatacgtgaggaatacgccaaagaagggcacaaagatcggaccacgtggcagatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatatcatacgtgaggaatacgccaaagaagggcacaaagatcggaccacgtggcagatt 300
Query: 301 ttccgtgagaaactccgtcttaaacgaaccggttctgcttggacctcgtctcttcatatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttccgtgagaaactccgtcttaaacgaaccggttctgcttggacctcgtctcttcatatc 360
Query: 361 cctggcttcggatatccttatccctaatcccaaacacattggaacagggttccggtctca 420
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 361 cct-gcttcggatatccttatccctaatcccaaacacattggaacagcgttccggtctca 419
Query: 421 ctccgccggtttaaacatccgagatctggttcacgcctataccgaatgtcagatc 475
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 420 ctccgccggtttaaacatccgagatctggttcacg-ctataccg-atgtcagatc 472
>At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profile: PF00097 zinc finger, C3HC4 type
(RING finger)
Length = 1052
Score = 52.0 bits (26), Expect = 4e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 302 tccgtgagaaactccgtcttaaacgaaccggttctgcttggacctcgtct 351
||||||| || |||||||||||||| | |||||||| ||||| |||||||
Sbjct: 481 tccgtgaaaagctccgtcttaaacgtaacggttctgtttggatctcgtct 530
>At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profile: PF00097 zinc finger, C3HC4 type
(RING finger)
Length = 907
Score = 38.2 bits (19), Expect = 0.065
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 313 ctccgtcttaaacgaaccggttctgcttggacctcgtct 351
|||||||||||||| |||| | ||| ||||| |||||||
Sbjct: 268 ctccgtcttaaacgcaccgctactggttggatctcgtct 306
>At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profile: PF00097 zinc finger, C3HC4 type
(RING finger)
Length = 915
Score = 38.2 bits (19), Expect = 0.065
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 313 ctccgtcttaaacgaaccggttctgcttggacctcgtct 351
|||||||||||||| |||| | ||| ||||| |||||||
Sbjct: 376 ctccgtcttaaacgcaccgctactggttggatctcgtct 414
>At5g54250.2 68418.m06758 cyclic nucleotide-regulated ion channel / cyclic
nucleotide-gated channel (CNGC4) identical to cyclic
nucleotide and calmodulin-regulated ion channel (cngc4)
GI:4581203 from [Arabidopsis thaliana]
Length = 2461
Score = 36.2 bits (18), Expect = 0.26
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 115 gccggactaagtctagac 132
||||||||||||||||||
Sbjct: 1566 gccggactaagtctagac 1549
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9917
Number of Sequences: 29161
Number of extensions: 9917
Number of successful extensions: 713
Number of sequences better than 10.0: 17
length of query: 475
length of database: 44,058,232
effective HSP length: 17
effective length of query: 458
effective length of database: 43,562,495
effective search space: 19951622710
effective search space used: 19951622710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)