BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226207_RAFL14_15_I11.r
(466 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43700.1 68418.m05342 auxin-responsive protein / indolea... 781 0.0
At1g04240.1 68414.m00415 auxin-responsive protein / indolea... 54 1e-06
At5g26731.1 68418.m03165 expressed protein 36 0.25
At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, put... 36 0.25
At3g18390.1 68416.m02339 expressed protein contains Pfam do... 36 0.25
>At5g43700.1 68418.m05342 auxin-responsive protein / indoleacetic acid-induced
protein 4 (IAA4) / auxin-induced protein (AUX2-11)
identical to SP|P33077 Auxin-responsive protein IAA4
(Indoleacetic acid-induced protein 4) (Auxin-induced
protein AUX2-11) {Arabidopsis thaliana}
Length = 1168
Score = 781 bits (394), Expect = 0.0
Identities = 451/462 (97%), Gaps = 6/462 (1%)
Strand = Plus / Minus
Query: 1 gaaacagaacagaaaaatgggtaattacatcaaaaacatcaaagttgttcgataagaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1168 gaaacagaacagaaaaatgggtaattacatcaaaaacatcaaagttgttcgataagaaca 1109
Query: 61 ttataaaaagtgaaaaaaacaaagataatcttcagattagatctttctaatagcacaaaa 120
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1108 ttataaaaagtgaaaaacacaaagataatcttcagattagatctttctaataccacaaaa 1049
Query: 121 cctttctctttaatggagacagagttacagctaaagtttagatttagatctttctcacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 cctttctctttaatggagacagagttacagctaaagtttagatttagatctttctcacac 989
Query: 181 ttttatgcttaagaccattttaagcatctctctttttaccgatgaggtaaacattcacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 ttttatgcttaagaccattttaagcatctctctttttaccgatgaggtaaacattcacaa 929
Query: 241 agtatgattgtatgaaacatctctccccaagaaccgcgagccagtttcagagctatattt 300
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 928 agtatgattgtatgaaacatctctccccaagaacc-cgag-cagtttcagagctatattt 871
Query: 301 acctctgtttaaagaaacagaacaaaaaacctctgtttttgaagtctttctctttgatct 360
| |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 870 a-ctctgtttcaagaaacagaacaaaaaa-ctctgtttttgaa-tctttctctttgatct 814
Query: 361 ttatctctcaattaggtttgttaaagaccaacacaaactaaacctttaacttcagatcct 420
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 813 ttatctctcaattaggtttgttaaagaccaccacaacctaaacctttaacttcagatcct 754
Query: 421 ttcatgatccttagcctctta-aagacgaaacaaacatctcc 461
||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 753 ttcatgatccttagcctcttacaagacgaaacaaacatctcc 712
>At1g04240.1 68414.m00415 auxin-responsive protein / indoleacetic acid-induced
protein 3 (IAA3) identical to SP|Q38822 Auxin-responsive
protein IAA3 (Indoleacetic acid-induced protein 3)
{Arabidopsis thaliana}; EST gb|T04296 comes from this
gene
Length = 1042
Score = 54.0 bits (27), Expect = 1e-06
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 398 ctaaacctttaacttcagatcctttcatgatccttagcctctt 440
|||||||||| |||| |||||||||||||||||||| |||||
Sbjct: 652 ctaaacctttggcttctgatcctttcatgatccttagtctctt 610
Score = 36.2 bits (18), Expect = 0.25
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 214 ttttaccgatgaggtaaa 231
||||||||||||||||||
Sbjct: 837 ttttaccgatgaggtaaa 820
Score = 32.2 bits (16), Expect = 3.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 184 tatgcttaagaccatt 199
||||||||||||||||
Sbjct: 872 tatgcttaagaccatt 857
>At5g26731.1 68418.m03165 expressed protein
Length = 807
Score = 36.2 bits (18), Expect = 0.25
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 439 ttaaagacgaaacaaaca 456
||||||||||||||||||
Sbjct: 435 ttaaagacgaaacaaaca 418
>At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative strong
similarity to gi:4467359
Length = 4129
Score = 36.2 bits (18), Expect = 0.25
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 428 tccttagcctcttaaaga 445
||||||||||||||||||
Sbjct: 1425 tccttagcctcttaaaga 1408
>At3g18390.1 68416.m02339 expressed protein contains Pfam domain, PF04581: Protein
of unknown function (DUF578)
Length = 3021
Score = 36.2 bits (18), Expect = 0.25
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 389 caacacaaactaaacctt 406
||||||||||||||||||
Sbjct: 1936 caacacaaactaaacctt 1953
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,313
Number of Sequences: 29161
Number of extensions: 21313
Number of successful extensions: 1795
Number of sequences better than 10.0: 39
length of query: 466
length of database: 44,058,232
effective HSP length: 17
effective length of query: 449
effective length of database: 43,562,495
effective search space: 19559560255
effective search space used: 19559560255
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)