BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AU225961_RAFL14_01_M01.r
         (421 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03850.1  68414.m00366 glutaredoxin family protein contai...   835   0.0  
At1g03850.2  68414.m00367 glutaredoxin family protein contai...    40   0.015
At4g39235.1  68417.m05554 expressed protein                        38   0.057
At1g55570.1  68414.m06360 multi-copper oxidase type I family...    38   0.057
At4g34150.1  68417.m04846 C2 domain-containing protein simil...    36   0.23 

>At1g03850.1 68414.m00366 glutaredoxin family protein contains INTERPRO Domain
           IPR002109, Glutaredoxin (thioltransferase)
          Length = 884

 Score =  835 bits (421), Expect = 0.0
 Identities = 421/421 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagaaaatttccatatttttttgtttttagcataattaatgaaatttcctttttcgtaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 gagaaaatttccatatttttttgtttttagcataattaatgaaatttcctttttcgtaac 825

                                                                       
Query: 61  ctagtcggaaaaaaggaaatactcgaaaatttgctattcttcttcttctaaacgacaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ctagtcggaaaaaaggaaatactcgaaaatttgctattcttcttcttctaaacgacaaaa 765

                                                                       
Query: 121 aataaatccatattttatctacgaattttaagatctccgatgatgatccattactaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 aataaatccatattttatctacgaattttaagatctccgatgatgatccattactaaatt 705

                                                                       
Query: 181 atctctgaaacaacttcgttcttcatctcagaacctatccgtaagatttgagcggaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 atctctgaaacaacttcgttcttcatctcagaacctatccgtaagatttgagcggaggaa 645

                                                                       
Query: 241 agcattctcttatcgtgatttagttatggtctcttctaatttaacccttcttgttgattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 agcattctcttatcgtgatttagttatggtctcttctaatttaacccttcttgttgattc 585

                                                                       
Query: 301 gttaccgtggatgcttcttacgctattctcaccagcggattcggtcgacggtggcgactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gttaccgtggatgcttcttacgctattctcaccagcggattcggtcgacggtggcgactg 525

                                                                       
Query: 361 agaacgacgaccatgtatcggttcgaatcttgatggagtggccattaatatgagcagcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agaacgacgaccatgtatcggttcgaatcttgatggagtggccattaatatgagcagcca 465

            
Query: 421 t 421
           |
Sbjct: 464 t 464



>At1g03850.2 68414.m00367 glutaredoxin family protein contains INTERPRO Domain
           IPR002109, Glutaredoxin (thioltransferase)
          Length = 660

 Score = 40.1 bits (20), Expect = 0.015
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 ccattaatatgagcagccat 421
           ||||||||||||||||||||
Sbjct: 483 ccattaatatgagcagccat 464



>At4g39235.1 68417.m05554 expressed protein
          Length = 658

 Score = 38.2 bits (19), Expect = 0.057
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 97  ttcttcttcttctaaacga 115
           |||||||||||||||||||
Sbjct: 69  ttcttcttcttctaaacga 51



>At1g55570.1 68414.m06360 multi-copper oxidase type I family protein nearly
            identical to pollen-specific BP10 protein
            [SP|Q00624][Brassica napus]; contains Multicopper oxidase
            domain PF00394
          Length = 2083

 Score = 38.2 bits (19), Expect = 0.057
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 97   ttcttcttcttctaaacga 115
            |||||||||||||||||||
Sbjct: 1982 ttcttcttcttctaaacga 2000



>At4g34150.1 68417.m04846 C2 domain-containing protein similar to
            calcium-dependent protein kinase [Dunaliella tertiolecta]
            GI:6644464; contains Pfam profile PF00168: C2 domain
          Length = 1143

 Score = 36.2 bits (18), Expect = 0.23
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 16   tttttttgtttttagcataatt 37
            |||||||||||||| |||||||
Sbjct: 1097 tttttttgtttttaacataatt 1076



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,191
Number of Sequences: 29161
Number of extensions: 28191
Number of successful extensions: 5739
Number of sequences better than 10.0: 55
length of query: 421
length of database: 44,058,232
effective HSP length: 17
effective length of query: 404
effective length of database: 43,562,495
effective search space: 17599247980
effective search space used: 17599247980
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)