BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226176_RAFL14_13_M20.r
(422 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC84286.1| putative ubiquitin-related modifier [Oryza ... 121 3e-27
dbj|BAB88939.1| Rurm1 [Oryza sativa]|gi|21624374|dbj|BAC011... 121 3e-27
ref|NP_912123.1| ubiquitin-related modifier-1 [Oryza sativa... 119 2e-26
ref|XP_231116.1| similar to RIKEN cDNA 2900073H19 [Rattus n... 101 4e-21
ref|NP_112176.1| chromosome 9 open reading frame 74 [Homo s... 100 1e-20
ref|NP_080891.1| RIKEN cDNA 2900073H19 [Mus musculus]|gi|12... 99 2e-20
dbj|BAC33621.1| unnamed protein product [Mus musculus] 99 2e-20
ref|NP_996018.1| CG33276-PA [Drosophila melanogaster]|gi|45... 93 1e-18
ref|NP_984083.1| ADL014Wp [Eremothecium gossypii]|gi|449826... 76 2e-13
ref|XP_399843.1| hypothetical protein UM02228.1 [Ustilago m... 73 1e-12
>dbj|BAC84286.1| putative ubiquitin-related modifier [Oryza sativa (japonica
cultivar-group)]
Length = 270
Score = 121 bits (303), Expect = 3e-27
Identities = 59/85 (69%), Positives = 70/85 (81%)
Frame = -3
Query: 375 SEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDW 196
S K+HKV++ PN D MK LL+WV++NLIKERPEMF+KGD+VRPGVLVL+NDCDW
Sbjct: 188 STKVHKVDLQ-PNDGDGK-VVMKGLLAWVKSNLIKERPEMFLKGDSVRPGVLVLINDCDW 245
Query: 195 ELSGQLDTVIEDKDVVVFISTLHGG 121
EL G LD +E+KDVVVFISTLHGG
Sbjct: 246 ELCGGLDAELEEKDVVVFISTLHGG 270
>dbj|BAB88939.1| Rurm1 [Oryza sativa]|gi|21624374|dbj|BAC01162.1| ubiquitin-related
modifier-1 [Oryza sativa (indica cultivar-group)]
Length = 100
Score = 121 bits (303), Expect = 3e-27
Identities = 59/85 (69%), Positives = 70/85 (81%)
Frame = -3
Query: 375 SEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDW 196
S K+HKV++ PN D MK LL+WV++NLIKERPEMF+KGD+VRPGVLVL+NDCDW
Sbjct: 18 STKVHKVDLQ-PNDGDGK-VVMKGLLAWVKSNLIKERPEMFLKGDSVRPGVLVLINDCDW 75
Query: 195 ELSGQLDTVIEDKDVVVFISTLHGG 121
EL G LD +E+KDVVVFISTLHGG
Sbjct: 76 ELCGGLDAELEEKDVVVFISTLHGG 100
>ref|NP_912123.1| ubiquitin-related modifier-1 [Oryza sativa (japonica
cultivar-group)]
Length = 305
Score = 119 bits (297), Expect = 2e-26
Identities = 58/84 (69%), Positives = 69/84 (82%)
Frame = -3
Query: 375 SEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDW 196
S K+HKV++ PN D MK LL+WV++NLIKERPEMF+KGD+VRPGVLVL+NDCDW
Sbjct: 188 STKVHKVDLQ-PNDGDGK-VVMKGLLAWVKSNLIKERPEMFLKGDSVRPGVLVLINDCDW 245
Query: 195 ELSGQLDTVIEDKDVVVFISTLHG 124
EL G LD +E+KDVVVFISTLHG
Sbjct: 246 ELCGGLDAELEEKDVVVFISTLHG 269
>ref|XP_231116.1| similar to RIKEN cDNA 2900073H19 [Rattus norvegicus]
Length = 101
Score = 101 bits (251), Expect = 4e-21
Identities = 44/82 (53%), Positives = 65/82 (78%)
Frame = -3
Query: 366 IHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELS 187
+ K V LP + + +++LL W++TNL+KERPE+F++GD+VRPG+LVL+ND DWEL
Sbjct: 22 VKKHQVTLPG--QEEPWDIRNLLVWIKTNLLKERPELFIQGDSVRPGILVLINDADWELL 79
Query: 186 GQLDTVIEDKDVVVFISTLHGG 121
G+LD ++D+D ++FISTLHGG
Sbjct: 80 GELDYQLQDQDSILFISTLHGG 101
>ref|NP_112176.1| chromosome 9 open reading frame 74 [Homo
sapiens]|gi|13097768|gb|AAH03581.1| Chromosome 9 open
reading frame 74 [Homo sapiens]
Length = 101
Score = 99.8 bits (247), Expect = 1e-20
Identities = 45/82 (54%), Positives = 64/82 (77%)
Frame = -3
Query: 366 IHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELS 187
I K V LP + + +++LL W++ NL+KERPE+F++GD+VRPG+LVL+ND DWEL
Sbjct: 22 IKKHRVTLPG--QEEPWDIRNLLIWIKKNLLKERPELFIQGDSVRPGILVLINDADWELL 79
Query: 186 GQLDTVIEDKDVVVFISTLHGG 121
G+LD ++D+D V+FISTLHGG
Sbjct: 80 GELDYQLQDQDSVLFISTLHGG 101
>ref|NP_080891.1| RIKEN cDNA 2900073H19 [Mus musculus]|gi|12859510|dbj|BAB31673.1|
unnamed protein product [Mus
musculus]|gi|20071708|gb|AAH26994.1| RIKEN cDNA
2900073H19 [Mus musculus]|gi|26340588|dbj|BAC33956.1|
unnamed protein product [Mus musculus]
Length = 101
Score = 98.6 bits (244), Expect = 2e-20
Identities = 43/82 (52%), Positives = 64/82 (77%)
Frame = -3
Query: 366 IHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELS 187
+ K V LP + + +++LL W++ NL+KERPE+F++GD+VRPG+LVL+ND DWEL
Sbjct: 22 VKKHQVALPG--QEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELL 79
Query: 186 GQLDTVIEDKDVVVFISTLHGG 121
G+LD ++D+D ++FISTLHGG
Sbjct: 80 GELDYQLQDQDSILFISTLHGG 101
>dbj|BAC33621.1| unnamed protein product [Mus musculus]
Length = 101
Score = 98.6 bits (244), Expect = 2e-20
Identities = 43/82 (52%), Positives = 64/82 (77%)
Frame = -3
Query: 366 IHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELS 187
+ K V LP + + +++LL W++ NL+KERPE+F++GD+VRPG+LVL+ND DWEL
Sbjct: 22 VKKHQVALPR--QEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELL 79
Query: 186 GQLDTVIEDKDVVVFISTLHGG 121
G+LD ++D+D ++FISTLHGG
Sbjct: 80 GELDYQLQDQDSILFISTLHGG 101
>ref|NP_996018.1| CG33276-PA [Drosophila melanogaster]|gi|45446015|gb|AAS65063.1|
CG33276-PA [Drosophila melanogaster]
Length = 121
Score = 92.8 bits (229), Expect = 1e-18
Identities = 39/66 (59%), Positives = 54/66 (81%)
Frame = -3
Query: 318 FTMKHLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFI 139
+T+ +LL W+ N++ ERPE+F++GDTVRPG+LVL+ND DWEL G+LD ++ D V+FI
Sbjct: 56 WTIANLLKWMHANILTERPELFLQGDTVRPGILVLINDTDWELLGELDYELQPNDNVLFI 115
Query: 138 STLHGG 121
STLHGG
Sbjct: 116 STLHGG 121
>ref|NP_984083.1| ADL014Wp [Eremothecium gossypii]|gi|44982644|gb|AAS51907.1|
ADL014Wp [Eremothecium gossypii]
Length = 100
Score = 75.9 bits (185), Expect = 2e-13
Identities = 35/86 (40%), Positives = 62/86 (71%), Gaps = 2/86 (2%)
Frame = -3
Query: 372 EKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEM--FMKGDTVRPGVLVLVNDCD 199
++ H+V+V+ NG+ T+ L+ ++ +N+I+++ ++ F++ +T+RPG+L L+ND D
Sbjct: 19 QRKHQVSVEGANGS----VTVGDLIDYIVSNMIQKQKDVSVFLEDNTIRPGILTLINDTD 74
Query: 198 WELSGQLDTVIEDKDVVVFISTLHGG 121
WEL G+ + V+ED D+V F STLHGG
Sbjct: 75 WELEGEKEYVLEDGDIVSFTSTLHGG 100
>ref|XP_399843.1| hypothetical protein UM02228.1 [Ustilago maydis
521]|gi|46098117|gb|EAK83350.1| hypothetical protein
UM02228.1 [Ustilago maydis 521]
Length = 394
Score = 72.8 bits (177), Expect = 1e-12
Identities = 36/78 (46%), Positives = 53/78 (67%)
Frame = -3
Query: 372 EKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWE 193
EK H + + + A ++ + L+ +R NLI ER E+F+ GD+VRPG+LVL+N+ DWE
Sbjct: 290 EKKHTLTIPRTDTAGNET-NVSFLIGHIRKNLITEREELFVDGDSVRPGILVLINNGDWE 348
Query: 192 LSGQLDTVIEDKDVVVFI 139
L G+ D V++D D VVFI
Sbjct: 349 LEGEGDYVLQDGDEVVFI 366
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 116
effective length of database: 409,858,350
effective search space used: 9836600400
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)