BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226141_RAFL14_11_N22.r
(438 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g29140.1 68417.m04170 MATE efflux protein-related severa... 835 0.0
At1g66620.1 68414.m07570 seven in absentia (SINA) protein, ... 50 2e-05
At5g37430.1 68418.m04503 hypothetical protein contains Pfam... 46 2e-04
At5g64830.1 68418.m08156 programmed cell death 2 C-terminal... 44 0.001
At4g28530.1 68417.m04082 no apical meristem (NAM) family pr... 44 0.001
>At4g29140.1 68417.m04170 MATE efflux protein-related several hypothetical
proteins - Arabidopsis thaliana; contains Pfam profile
PF01554: Uncharacterized membrane protein family
Length = 1974
Score = 835 bits (421), Expect = 0.0
Identities = 428/429 (99%), Gaps = 1/429 (0%)
Strand = Plus / Plus
Query: 1 gaagaaaaaaaaaatcctgccaactcctttattaagatggtaagagagagctctgagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagaaaaaaaaaatcctgccaactcctttattaagatggtaagagagagctctgagaag 60
Query: 61 agagaagcagcaccaaaaaaaattcatatctctctttcctttcaattttctcagttgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agagaagcagcaccaaaaaaaattcatatctctctttcctttcaattttctcagttgtta 120
Query: 121 aaacctctcatactcattagagagctcttcacgagagaactctttctctttcccattaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaacctctcatactcattagagagctcttcacgagagaactctttctctttcccattaaa 180
Query: 181 gatcaaatctttcttcttcttcatcaacaccatcatcatcatcaccgtcatgtgtaaccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatcaaatctttcttcttcttcatcaacaccatcatcatcatcaccgtcatgtgtaaccc 240
Query: 241 atcaacaacaacaacaaccaccggttcagagaaccaagaatctcgaaccggactcttcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcaacaacaacaacaaccaccggttcagagaaccaagaatctcgaaccggactcttcct 300
Query: 301 cgatctcttctcgatcaatagctttgaacccacaaagagaaatct-cggcattgtgagaa 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 301 cgatctcttctcgatcaatagctttgaacccacaaagagaaatctccggcattgtgagaa 360
Query: 360 cagaggatctcctcttatggcagaagctgtaacagaggcgaaatctctcttcacgttagc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cagaggatctcctcttatggcagaagctgtaacagaggcgaaatctctcttcacgttagc 420
Query: 420 ttttccgat 428
|||||||||
Sbjct: 421 ttttccgat 429
>At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative similar to
SIAH1 protein [Brassica napus var. napus] GI:7657876;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 942
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 192 tcttcttcttcatcaacaccatcatcatcatca 224
||||||||||||||| || ||||||||||||||
Sbjct: 923 tcttcttcttcatcatcatcatcatcatcatca 891
Score = 44.1 bits (22), Expect = 0.001
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 191 ttcttcttcttcatcaacaccatcatcatcatca 224
||||||||| |||||| || ||||||||||||||
Sbjct: 921 ttcttcttcatcatcatcatcatcatcatcatca 888
Score = 36.2 bits (18), Expect = 0.24
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 191 ttcttcttcttcatcaacaccatcatcatcatca 224
|||||| || |||||| || ||||||||||||||
Sbjct: 918 ttcttcatcatcatcatcatcatcatcatcatca 885
>At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04510 : Family of
unknown function (DUF577)); common family comprised of
At5g37410, At5g37400, At5g37920, At5g37460, At5g37650,
At5g37470, At5g37420, At5g37430
Length = 1824
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 201 tcatcaacaccatcatcatcatcaccgtcat 231
|||||| ||||||||||||||||||| ||||
Sbjct: 1703 tcatcatcaccatcatcatcatcaccatcat 1673
Score = 40.1 bits (20), Expect = 0.015
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 201 tcatcaacaccatcatcatcatca 224
|||||| |||||||||||||||||
Sbjct: 1724 tcatcatcaccatcatcatcatca 1701
Score = 38.2 bits (19), Expect = 0.060
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 202 catcaacaccatcatcatcatca 224
||||| |||||||||||||||||
Sbjct: 1789 catcatcaccatcatcatcatca 1767
Score = 38.2 bits (19), Expect = 0.060
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 202 catcaacaccatcatcatcatca 224
||||| |||||||||||||||||
Sbjct: 1756 catcatcaccatcatcatcatca 1734
Score = 38.2 bits (19), Expect = 0.060
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 201 tcatcaacaccatcatcatcatcaccgtcat 231
|||||| || |||||||||||||||| ||||
Sbjct: 1814 tcatcatcatcatcatcatcatcaccatcat 1784
Score = 36.2 bits (18), Expect = 0.24
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 202 catcaacaccatcatcatcatcaccgtcat 231
||||| || |||||||||||||||| ||||
Sbjct: 1780 catcatcatcatcatcatcatcaccatcat 1751
Score = 34.2 bits (17), Expect = 0.93
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 211 catcatcatcatcaccgtcat 231
|||||||||||||||| ||||
Sbjct: 1741 catcatcatcatcaccatcat 1721
Score = 34.2 bits (17), Expect = 0.93
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 211 catcatcatcatcaccgtcat 231
|||||||||||||||| ||||
Sbjct: 1708 catcatcatcatcaccatcat 1688
Score = 34.2 bits (17), Expect = 0.93
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 201 tcatcaacaccatcatcatca 221
|||||| ||||||||||||||
Sbjct: 1736 tcatcatcaccatcatcatca 1716
Score = 34.2 bits (17), Expect = 0.93
Identities = 29/33 (87%)
Strand = Plus / Minus
Query: 201 tcatcaacaccatcatcatcatcaccgtcatgt 233
|||||| ||||||||||| ||||| | ||||||
Sbjct: 1688 tcatcatcaccatcatcaccatcatcatcatgt 1656
Score = 32.2 bits (16), Expect = 3.7
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 201 tcatcaacaccatcatcatcatca 224
|||||| || ||||||||||||||
Sbjct: 1754 tcatcaccatcatcatcatcatca 1731
Score = 32.2 bits (16), Expect = 3.7
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 201 tcatcaacaccatcatcatcatca 224
|||||| ||||||||||| |||||
Sbjct: 1799 tcatcatcaccatcatcaccatca 1776
Score = 32.2 bits (16), Expect = 3.7
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 201 tcatcaacaccatcatcatcatca 224
|||||| ||||||||||| |||||
Sbjct: 1766 tcatcatcaccatcatcaccatca 1743
Score = 32.2 bits (16), Expect = 3.7
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 201 tcatcaacaccatcatcatcatca 224
|||||| || ||||||||||||||
Sbjct: 1721 tcatcaccatcatcatcatcatca 1698
Score = 32.2 bits (16), Expect = 3.7
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 201 tcatcaacaccatcatcatcatca 224
|||||| || ||||||||||||||
Sbjct: 1787 tcatcaccatcatcatcatcatca 1764
>At5g64830.1 68418.m08156 programmed cell death 2 C-terminal domain-containing
protein low similarity to SP|P46718 Programmed cell
death protein 2 (Zinc finger protein Rp-8) {Mus
musculus}; contains Pfam profile PF04194: Programmed
cell death protein 2, C-terminal domain
Length = 1501
Score = 44.1 bits (22), Expect = 0.001
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 192 tcttcttcttcatcaacaccatcatcatcatcaccgtc 229
||||| || |||||| || |||||||||||||||||||
Sbjct: 525 tcttcatcatcatcatcatcatcatcatcatcaccgtc 488
>At4g28530.1 68417.m04082 no apical meristem (NAM) family protein contains Pfam
PF02365: No apical meristem (NAM) domain; No apical
meristem gene (NAM), required for pattern formation in
embryos and flowers-Petunia hybrida, PATCHX:E205713
Length = 1468
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 199 cttcatcaacaccatcatcatcatca 224
||||||||||| ||||||||||||||
Sbjct: 324 cttcatcaacatcatcatcatcatca 299
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 52,128
Number of Sequences: 29161
Number of extensions: 52128
Number of successful extensions: 10135
Number of sequences better than 10.0: 772
length of query: 438
length of database: 44,058,232
effective HSP length: 17
effective length of query: 421
effective length of database: 43,562,495
effective search space: 18339810395
effective search space used: 18339810395
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)