BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226129_RAFL14_11_E16.r
(248 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g40090.1 68417.m05675 arabinogalactan-protein (AGP3) In... 383 e-106
At3g05580.1 68416.m00619 serine/threonine protein phosphata... 48 3e-05
At5g65050.1 68418.m08182 MADS-box protein (MAF2) 42 0.002
At4g17970.1 68417.m02675 expressed protein contains Pfam pr... 42 0.002
At4g17760.1 68417.m02651 expressed protein 42 0.002
>At4g40090.1 68417.m05675 arabinogalactan-protein (AGP3) InDels between the
genome sequence and the cDNA prevent identical
translations from being annotated; the basis for this is
under investigation.
Length = 729
Score = 383 bits (193), Expect = e-106
Identities = 236/248 (95%), Gaps = 3/248 (1%)
Strand = Plus / Minus
Query: 1 aaacaagactttattaattaaaaaaataatgaacaaaattacaatcacaacttgttccct 60
||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 726 aaacaagactttattaattaaaaaaataatgaagaaaattacaatcagaacttcttccct 667
Query: 61 caggtttaactcccatggtccaatcaaagttataaaaatatcacaaagatcccaaaaaga 120
||||||||| |||||||||||||||||||||||| |||||||| |||||||||||| ||
Sbjct: 666 caggtttaa-tcccatggtccaatcaaagttatacaaatatcaaaaagatcccaaa--ga 610
Query: 121 aaacaacaacaaagaggacgaaatgtattagggaaaaagagagagatctctcaacgaaat 180
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 609 aaacaacaacaaagaggacgaaatgtattagggaaaaacagagagatctctcaaacaaat 550
Query: 181 catgataagaaaaaacaaaggagagtgagagagagagaatgatagagtaataagcaaggc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 549 catgataagaaaaaacaaaggagagtgagagagagagaatgatagagtaatacgcaaggc 490
Query: 241 actcttta 248
||||||||
Sbjct: 489 actcttta 482
>At3g05580.1 68416.m00619 serine/threonine protein phosphatase, putative similar
to serine/threonine protein phosphatase PP1 isozyme 8
SP:O82734 from [Arabidopsis thaliana]
Length = 1465
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 188 agaaaaaacaaaggagagtgagagagagagaa 219
|||||||||||| ||||| |||||||||||||
Sbjct: 1244 agaaaaaacaaaagagagagagagagagagaa 1275
>At5g65050.1 68418.m08182 MADS-box protein (MAF2)
Length = 901
Score = 42.1 bits (21), Expect = 0.002
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 190 aaaaaacaaaggagagtgagagagagaga 218
|||||| ||||||||| ||||||||||||
Sbjct: 11 aaaaaaaaaaggagagagagagagagaga 39
Score = 30.2 bits (15), Expect = 8.0
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 201 gagagtgagagagagagaa 219
||||| |||||||||||||
Sbjct: 34 gagagagagagagagagaa 52
>At4g17970.1 68417.m02675 expressed protein contains Pfam profile PF01027:
Uncharacterized protein family UPF0005
Length = 1736
Score = 42.1 bits (21), Expect = 0.002
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 190 aaaaaacaaaggagagtgagagagagaga 218
|||||| ||||||||| ||||||||||||
Sbjct: 1 aaaaaaaaaaggagagagagagagagaga 29
>At4g17760.1 68417.m02651 expressed protein
Length = 1017
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 198 aaggagagtgagagagagaga 218
|||||||||||||||||||||
Sbjct: 3 aaggagagtgagagagagaga 23
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,335
Number of Sequences: 29161
Number of extensions: 21335
Number of successful extensions: 3571
Number of sequences better than 10.0: 324
length of query: 248
length of database: 44,058,232
effective HSP length: 16
effective length of query: 232
effective length of database: 43,591,656
effective search space: 10113264192
effective search space used: 10113264192
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)