BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226128_RAFL14_11_E06.r
(439 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finge... 870 0.0
At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finge... 78 7e-14
At5g65080.1 68418.m08186 MADS-box family protein 38 0.060
At5g37980.1 68418.m04574 NADP-dependent oxidoreductase, put... 36 0.24
At5g28780.1 68418.m03538 hypothetical protein various predi... 36 0.24
>At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profile: PF00097 Zinc finger, C3HC4 type
(RING finger) domain
Length = 2102
Score = 870 bits (439), Expect = 0.0
Identities = 439/439 (100%)
Strand = Plus / Minus
Query: 1 agaaaagggcatttgtaaagtgtgatcttttacatttaaaatggatgcttttaacaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 agaaaagggcatttgtaaagtgtgatcttttacatttaaaatggatgcttttaacaaaag 1225
Query: 61 acacatgactttgatagttatgtaaataaatatatacagaagctttttaattgaggaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 acacatgactttgatagttatgtaaataaatatatacagaagctttttaattgaggaaat 1165
Query: 121 ggaatctgtttctatatgtgcagaatcttattccctctggttggttgagttttgtcttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 ggaatctgtttctatatgtgcagaatcttattccctctggttggttgagttttgtcttca 1105
Query: 181 agattgatcagtggttcctttaagaatgttgtatttgcaaagagggcatgttgctctcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 agattgatcagtggttcctttaagaatgttgtatttgcaaagagggcatgttgctctcat 1045
Query: 241 cttaagccatttcacaatacaagtcgaatgaaaatggtggttacaaggaagagcatgaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 cttaagccatttcacaatacaagtcgaatgaaaatggtggttacaaggaagagcatgaag 985
Query: 301 ctctgcgccatcctcatatgaactcagacatatgcaacaatccgcatcctcagcaagcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 ctctgcgccatcctcatatgaactcagacatatgcaacaatccgcatcctcagcaagcag 925
Query: 361 tgttctttcagttgctaagcataagccattgatcggtataggaaccattttaccaggtcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 tgttctttcagttgctaagcataagccattgatcggtataggaaccattttaccaggtcc 865
Query: 421 agtaatgttcttctcattg 439
|||||||||||||||||||
Sbjct: 864 agtaatgttcttctcattg 846
>At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger) family protein very
low similarity to RING-H2 finger protein RHG1a
[Arabidopsis thaliana] GI:3822225; contains Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1306
Score = 77.8 bits (39), Expect = 7e-14
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 245 agccatttcacaatacaagtcgaatgaaaatggtggttacaaggaagagcatgaagctct 304
|||||||||||||| || || |||||||| |||||||| |||||||| | ||||||
Sbjct: 1062 agccatttcacaatgcacgtagaatgaaagtggtggttgcaaggaagtgagaccagctct 1003
Query: 305 gcgccatcctcatatgaactcagacatatgcaacaatccgcatcctc 351
|| ||||| ||||||||||||| |||||| ||||| || ||||||||
Sbjct: 1002 gctccatcttcatatgaactcaaacatatacaacagtcagcatcctc 956
>At5g65080.1 68418.m08186 MADS-box family protein
Length = 1018
Score = 38.2 bits (19), Expect = 0.060
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 166 tgagttttgtcttcaagat 184
|||||||||||||||||||
Sbjct: 430 tgagttttgtcttcaagat 412
>At5g37980.1 68418.m04574 NADP-dependent oxidoreductase, putative similar to
probable NADP-dependent oxidoreductase (zeta-crystallin
homolog) P1 [SP|Q39172][gi:886428] and P2
[SP|Q39173][gi:886430], Arabidopsis thaliana
Length = 1252
Score = 36.2 bits (18), Expect = 0.24
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 281 ttacaaggaagagcatga 298
||||||||||||||||||
Sbjct: 690 ttacaaggaagagcatga 707
>At5g28780.1 68418.m03538 hypothetical protein various predicted proteins,
Arabidopsis thaliana
Length = 1014
Score = 36.2 bits (18), Expect = 0.24
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 395 ggtataggaaccattttaccag 416
||||||| ||||||||||||||
Sbjct: 710 ggtatagaaaccattttaccag 689
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,108
Number of Sequences: 29161
Number of extensions: 15108
Number of successful extensions: 1196
Number of sequences better than 10.0: 32
length of query: 439
length of database: 44,058,232
effective HSP length: 17
effective length of query: 422
effective length of database: 43,562,495
effective search space: 18383372890
effective search space used: 18383372890
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)