BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226125_RAFL14_11_B02.r
(434 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72510.2 68414.m08385 expressed protein 839 0.0
At1g72510.1 68414.m08384 expressed protein 839 0.0
At2g09970.1 68415.m01036 hypothetical protein 174 4e-43
At4g28530.1 68417.m04082 no apical meristem (NAM) family pr... 40 0.015
At4g32030.1 68417.m04560 expressed protein 36 0.23
>At1g72510.2 68414.m08385 expressed protein
Length = 1139
Score = 839 bits (423), Expect = 0.0
Identities = 429/431 (99%)
Strand = Plus / Minus
Query: 2 aaattaatgtgatgcacctttttcatttctattttgtgatagagaatcatcacagagata 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 aaattaatgtgatgcacctttttcatttctattttgtgatagagaatcatcacagagata 1080
Query: 62 agcatgaccctaccttccatggtttttgatcatacatgtcttttcaatatgataaatttc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 agcatgaccctaccttccatggtttttgatcatacatgtcttttcaatatgataaatttc 1020
Query: 122 taaagaatctccttcttaattatctaattataatcgaatagtataaacatattttcattt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 taaagaatctccttcttaattatctaattataatcgaatagtataaacatattttcattt 960
Query: 182 cattttgttcttgtttaactaagctcacagcaacagaattccgaatattagctagcaatt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 cattttgttcttgtttaactaagctcacagcaacagaattccgaatattagctagcaatt 900
Query: 242 ggagaaagaataaaagacagaaacagagcaccaaattattcttttagcccaaaattttcc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 ggagaaagaataaaagacagaaacagagcaccaaattattcttttagcccaaaattttcc 840
Query: 302 aaaagtacaacaacaaatccggcaaaaacacatacagaaaccaatttttgatttaccgac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 aaaagtacaacaacaaatccggcaaaaacacatacagaaaccaatttttgatttaccgac 780
Query: 362 gaaaatttcaaatcagaaaaccggatttgatccaagtgggtccctaaaccgagggtttaa 421
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 779 gaaaatttcaaatcagaaaaccggatttgatccaagtgggtccctaaaccgacggtttaa 720
Query: 422 aacaaattttt 432
||||| |||||
Sbjct: 719 aacaatttttt 709
>At1g72510.1 68414.m08384 expressed protein
Length = 1381
Score = 839 bits (423), Expect = 0.0
Identities = 429/431 (99%)
Strand = Plus / Minus
Query: 2 aaattaatgtgatgcacctttttcatttctattttgtgatagagaatcatcacagagata 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 aaattaatgtgatgcacctttttcatttctattttgtgatagagaatcatcacagagata 1322
Query: 62 agcatgaccctaccttccatggtttttgatcatacatgtcttttcaatatgataaatttc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 agcatgaccctaccttccatggtttttgatcatacatgtcttttcaatatgataaatttc 1262
Query: 122 taaagaatctccttcttaattatctaattataatcgaatagtataaacatattttcattt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 taaagaatctccttcttaattatctaattataatcgaatagtataaacatattttcattt 1202
Query: 182 cattttgttcttgtttaactaagctcacagcaacagaattccgaatattagctagcaatt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 cattttgttcttgtttaactaagctcacagcaacagaattccgaatattagctagcaatt 1142
Query: 242 ggagaaagaataaaagacagaaacagagcaccaaattattcttttagcccaaaattttcc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 ggagaaagaataaaagacagaaacagagcaccaaattattcttttagcccaaaattttcc 1082
Query: 302 aaaagtacaacaacaaatccggcaaaaacacatacagaaaccaatttttgatttaccgac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 aaaagtacaacaacaaatccggcaaaaacacatacagaaaccaatttttgatttaccgac 1022
Query: 362 gaaaatttcaaatcagaaaaccggatttgatccaagtgggtccctaaaccgagggtttaa 421
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1021 gaaaatttcaaatcagaaaaccggatttgatccaagtgggtccctaaaccgacggtttaa 962
Query: 422 aacaaattttt 432
||||| |||||
Sbjct: 961 aacaatttttt 951
>At2g09970.1 68415.m01036 hypothetical protein
Length = 700
Score = 174 bits (88), Expect = 4e-43
Identities = 144/163 (88%), Gaps = 6/163 (3%)
Strand = Plus / Minus
Query: 264 acagagcaccaaattattcttttagcccaaaattttccaaaagtacaacaacaaatccgg 323
||||||||||| |||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 698 acagagcaccatattattcttttagcccaaaaatttccacaagtacaa------atccgg 645
Query: 324 caaaaacacatacagaaaccaatttttgatttaccgacgaaaatttcaaatcagaaaacc 383
|||||||||||||| | ||||||||||| ||||| ||||||| ||||| |||||||||||
Sbjct: 644 caaaaacacatacatagaccaatttttggtttactgacgaaattttcagatcagaaaacc 585
Query: 384 ggatttgatccaagtgggtccctaaaccgagggtttaaaacaa 426
||||||||| ||||||||||||||||||| ||||| ||||||
Sbjct: 584 ggatttgattcaagtgggtccctaaaccgtcggttttaaacaa 542
>At4g28530.1 68417.m04082 no apical meristem (NAM) family protein contains Pfam
PF02365: No apical meristem (NAM) domain; No apical
meristem gene (NAM), required for pattern formation in
embryos and flowers-Petunia hybrida, PATCHX:E205713
Length = 1468
Score = 40.1 bits (20), Expect = 0.015
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 258 acagaaacagagcaccaaat 277
||||||||||||||||||||
Sbjct: 574 acagaaacagagcaccaaat 593
>At4g32030.1 68417.m04560 expressed protein
Length = 1332
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 417 tttaaaacaaattttttc 434
||||||||||||||||||
Sbjct: 1196 tttaaaacaaattttttc 1179
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,283
Number of Sequences: 29161
Number of extensions: 17283
Number of successful extensions: 1374
Number of sequences better than 10.0: 35
length of query: 434
length of database: 44,058,232
effective HSP length: 17
effective length of query: 417
effective length of database: 43,562,495
effective search space: 18165560415
effective search space used: 18165560415
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)