BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226124_RAFL14_11_A22.r
(429 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32610.1 68417.m04643 mitochondrial glycoprotein family ... 367 e-101
At5g46170.1 68418.m05679 F-box family protein contains F-bo... 42 0.004
At2g25670.2 68415.m03077 expressed protein 42 0.004
At2g25670.1 68415.m03076 expressed protein 42 0.004
At5g08300.1 68418.m00977 succinyl-CoA ligase [GDP-forming] ... 40 0.015
>At4g32610.1 68417.m04643 mitochondrial glycoprotein family protein / MAM33 family
protein low similarity to SP|P40513 Mitochondrial acidic
protein MAM33, mitochondrial precursor {Saccharomyces
cerevisiae}; contains Pfam profile PF02330: Mitochondrial
glycoprotein
Length = 2289
Score = 367 bits (185), Expect = e-101
Identities = 234/245 (95%), Gaps = 4/245 (1%)
Strand = Plus / Minus
Query: 184 ctcacaggttgctgattgtagtttttcttttcttttttcttcgctgcggccaactttgcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1403 ctcacaggttgctgattgtagtttttcttttcttttttcttcgctgcggccaactttgcc 1344
Query: 244 ttgctcgcagctggtt-ctttgcagcaggtgttgaagcaccatcaaccctccttgcttga 302
|| |||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 1343 ttcctcgcagctgcttcctttgcagcagctgttgaagcaccatcaa-cctccttgcttga 1285
Query: 303 tttcttcttcttcattgatgcaatcttatttagcccgttctttgacgtcgatggaagaag 362
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 1284 tttcttcttcttcattgatgcaatcttctttag-ccgttctttgacgtcgatggaagaag 1226
Query: 363 aagactcctcctgatcaggggactcacttgcagcat-cgagttggtcttcacttcactct 421
||||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 1225 aagactcctcctgctcagcggactcacttgcagcatccgagttgctcttcacttcactct 1166
Query: 422 gggat 426
|||||
Sbjct: 1165 gggat 1161
>At5g46170.1 68418.m05679 F-box family protein contains F-box domain Pfam:PF00646
Length = 1691
Score = 42.1 bits (21), Expect = 0.004
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 203 agtttttcttttcttttttct 223
|||||||||||||||||||||
Sbjct: 1567 agtttttcttttcttttttct 1587
>At2g25670.2 68415.m03077 expressed protein
Length = 1793
Score = 42.1 bits (21), Expect = 0.004
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 290 cctccttgcttgatttcttcttcttcattgatgcaatcttattta 334
|||| |||| ||| |||||||||||||| ||||||| ||| ||||
Sbjct: 1285 cctctttgcctgacttcttcttcttcatggatgcaagcttcttta 1241
>At2g25670.1 68415.m03076 expressed protein
Length = 1675
Score = 42.1 bits (21), Expect = 0.004
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 290 cctccttgcttgatttcttcttcttcattgatgcaatcttattta 334
|||| |||| ||| |||||||||||||| ||||||| ||| ||||
Sbjct: 1167 cctctttgcctgacttcttcttcttcatggatgcaagcttcttta 1123
>At5g08300.1 68418.m00977 succinyl-CoA ligase [GDP-forming] alpha-chain,
mitochondrial, putative / succinyl-CoA synthetase, alpha
chain, putative / SCS-alpha, putative identical to
SP|P53586 Succinyl-CoA ligase [GDP-forming] alpha-chain,
mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA
synthetase, alpha chain) (SCS-alpha) {Arabidopsis
thaliana}; strong similarity to SP|P13086 Succinyl-CoA
ligase [GDP-forming] alpha-chain, mitochondrial precursor
{Rattus norvegicus}; contains Pfam profiles PF00549:
CoA-ligase, PF02629: CoA binding domain
Length = 1398
Score = 40.1 bits (20), Expect = 0.015
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 205 tttttcttttcttttttctt 224
||||||||||||||||||||
Sbjct: 1221 tttttcttttcttttttctt 1202
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,891
Number of Sequences: 29161
Number of extensions: 41891
Number of successful extensions: 4219
Number of sequences better than 10.0: 154
length of query: 429
length of database: 44,058,232
effective HSP length: 17
effective length of query: 412
effective length of database: 43,562,495
effective search space: 17947747940
effective search space used: 17947747940
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)