BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226111_RAFL14_09_N13.r
(435 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75960.1 68414.m08822 AMP-binding protein, putative simi... 839 0.0
At5g16370.1 68418.m01913 AMP-binding protein, putative simi... 121 5e-27
At5g16340.1 68418.m01910 AMP-binding protein, putative simi... 121 5e-27
At5g02200.1 68418.m00141 phytochrome A specific signal tran... 34 0.93
At4g33810.1 68417.m04798 glycosyl hydrolase family 10 prote... 34 0.93
>At1g75960.1 68414.m08822 AMP-binding protein, putative similar to AMP-binding
protein GI:1903034 from [Brassica napus]; contains Pfam
profile: PF00501 AMP-binding enzyme; identical to cDNA
adenosine monophosphate binding protein 8 AMPBP8
(AMPBP8) GI:20799724
Length = 1842
Score = 839 bits (423), Expect = 0.0
Identities = 432/435 (99%)
Strand = Plus / Plus
Query: 1 acatcaatataattactttaattgtttgtctggctagtcaagtggtctctcgtctcgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acatcaatataattactttaattgtttgtctggctagtcaagtggtctctcgtctcgtca 60
Query: 61 ttgtgtatcttatctttactatgagactgaaagagatatcttctttatatacagtaacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgtgtatcttatctttactatgagactgaaagagatatcttctttatatacagtaacac 120
Query: 121 tcacattgtggtcactcgaaaagagctaaagaaaatggaagatttgaagccaagtgccgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcacattgtggtcactcgaaaagagctaaagaaaatggaagatttgaagccaagtgccgc 180
Query: 181 taactcgttaccattgacactgttaggctttcttgagagagcagccaccgtgtatggaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taactcgttaccattgacactgttaggctttcttgagagagcagccaccgtgtatggaga 240
Query: 241 ctgtacctccatcgtttacgggaattccaccgtgtacacatggggagaaacgaatcaccg 300
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 241 ctgtacctccatcgtttacggcaattccaccgtgtacacatggcgagaaacgaatcaccg 300
Query: 301 ttggctctgcgtcgcgtctgctctgtcttccattggaataggaagatccgacgttgtctc 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgcctctgcgtcgcgtctgctctgtcttccattggaataggaagatccgacgttgtctc 360
Query: 361 tgtcctatctgctaatactccggaaatgtacgagctccagttttccgttccgatgtctgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgtcctatctgctaatactccggaaatgtacgagctccagttttccgttccgatgtctgg 420
Query: 421 cgcgatccttaacaa 435
|||||||||||||||
Sbjct: 421 cgcgatccttaacaa 435
>At5g16370.1 68418.m01913 AMP-binding protein, putative similar to AMP-binding
protein GI:1903034 from [Brassica napus]; contains Pfam
AMP-binding domain PF00501; identical to cDNA adenosine
monophosphate binding protein 5 AMPBP5 (AMPBP5)
GI:20799718
Length = 1907
Score = 121 bits (61), Expect = 5e-27
Identities = 181/221 (81%)
Strand = Plus / Plus
Query: 215 gagagagcagccaccgtgtatggagactgtacctccatcgtttacgggaattccaccgtg 274
|||||||| |||||||| || || |||||||||||||||||||| || | ||||||
Sbjct: 91 gagagagccgccaccgtttacggtgactgtacctccatcgtttatggcagcaacaccgtt 150
Query: 275 tacacatggggagaaacgaatcaccgttggctctgcgtcgcgtctgctctgtcttccatt 334
||||| ||| | ||||| || | |||||| ||| |||| |||||| |||||||||| ||
Sbjct: 151 tacacgtggcgtgaaacaaacctccgttgtctccgcgtggcgtcttctctgtcttcaatc 210
Query: 335 ggaataggaagatccgacgttgtctctgtcctatctgctaatactccggaaatgtacgag 394
||||| || || || ||||| |||||||| || ||| | |||||||||| |||||||||
Sbjct: 211 ggaatcggcaggtctgacgtagtctctgttctctctcccaatactccggctatgtacgag 270
Query: 395 ctccagttttccgttccgatgtctggcgcgatccttaacaa 435
||||||||| | ||||| ||||| ||||| ||||| |||||
Sbjct: 271 ctccagtttgctgttcccatgtccggcgcaatcctcaacaa 311
>At5g16340.1 68418.m01910 AMP-binding protein, putative similar to AMP-binding
protein GI:1903034 from [Brassica napus]; contains Pfam
AMP-binding domain PF00501; identical to adenosine
monophosphate binding protein 6 AMPBP6 (AMPBP6)
GI:20799720
Length = 1814
Score = 121 bits (61), Expect = 5e-27
Identities = 181/221 (81%)
Strand = Plus / Plus
Query: 215 gagagagcagccaccgtgtatggagactgtacctccatcgtttacgggaattccaccgtg 274
|||||||| |||||||| || || |||||||||||||||||||| || | ||||||
Sbjct: 61 gagagagccgccaccgtttacggtgactgtacctccatcgtttatggcagcaacaccgtt 120
Query: 275 tacacatggggagaaacgaatcaccgttggctctgcgtcgcgtctgctctgtcttccatt 334
||||| ||| | ||||| || | |||||| ||| |||| |||||| |||||||||| ||
Sbjct: 121 tacacgtggcgtgaaacaaacctccgttgtctccgcgtggcgtcttctctgtcttcaatc 180
Query: 335 ggaataggaagatccgacgttgtctctgtcctatctgctaatactccggaaatgtacgag 394
||||| || || || ||||| |||||||| || ||| | |||||||||| |||||||||
Sbjct: 181 ggaatcggcaggtctgacgtagtctctgttctctctcccaatactccggctatgtacgag 240
Query: 395 ctccagttttccgttccgatgtctggcgcgatccttaacaa 435
||||||||| | ||||| ||||| ||||| ||||| |||||
Sbjct: 241 ctccagtttgctgttcccatgtccggcgcaatcctcaacaa 281
>At5g02200.1 68418.m00141 phytochrome A specific signal transduction
component-related contains weak similarity to
phytochrome A specific signal transduction component
PAT3 [Arabidopsis thaliana] gi|19421998|gb|AAL87850 and
far-red elongated hypocotyl protein 1 [Arabidopsis
thaliana] gi|17148773|gb|AAL35819
Length = 1349
Score = 34.2 bits (17), Expect = 0.93
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 67 atcttatctttactatg 83
|||||||||||||||||
Sbjct: 466 atcttatctttactatg 482
>At4g33810.1 68417.m04798 glycosyl hydrolase family 10 protein similar to
tapetum specific protein GI:3885492 from [Zea mays]
Length = 1611
Score = 34.2 bits (17), Expect = 0.93
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 150 agaaaatggaagatttg 166
|||||||||||||||||
Sbjct: 216 agaaaatggaagatttg 232
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,236
Number of Sequences: 29161
Number of extensions: 11236
Number of successful extensions: 861
Number of sequences better than 10.0: 19
length of query: 435
length of database: 44,058,232
effective HSP length: 17
effective length of query: 418
effective length of database: 43,562,495
effective search space: 18209122910
effective search space used: 18209122910
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)