BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226093_RAFL14_08_L22.r
(431 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g50300.1 68418.m06228 xanthine/uracil/vitamin C permease... 854 0.0
At3g04740.1 68416.m00510 expressed protein (SWP1) 38 0.059
At2g37100.1 68415.m04552 protamine P1 family protein contai... 38 0.059
At5g19280.1 68418.m02298 kinase associated protein phosphat... 36 0.23
At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesi... 36 0.23
>At5g50300.1 68418.m06228 xanthine/uracil/vitamin C permease family protein
contains Pfam profile PF00860: Permease family
Length = 2057
Score = 854 bits (431), Expect = 0.0
Identities = 431/431 (100%)
Strand = Plus / Minus
Query: 1 gaaagaccaaaaagtagatttacaaacttgaatcatgttaatttaaatattcttaacacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2057 gaaagaccaaaaagtagatttacaaacttgaatcatgttaatttaaatattcttaacacc 1998
Query: 61 aatttgcaatttctgaaggactcagaagtctttgattgacatatatgctacaaacaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1997 aatttgcaatttctgaaggactcagaagtctttgattgacatatatgctacaaacaaaag 1938
Query: 121 aagcatttagttgaaacaatagaaccctacaaagtagaaacaatgcatgcacaagcagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1937 aagcatttagttgaaacaatagaaccctacaaagtagaaacaatgcatgcacaagcagcc 1878
Query: 181 aagaaattatcaaacacacgttcatggcagctgatgcatccaatgttacttcactactct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1877 aagaaattatcaaacacacgttcatggcagctgatgcatccaatgttacttcactactct 1818
Query: 241 ctcctacgcaaactaaaccaaaacaacaagaaagtaaaagaaagagaaaaaaaaacaccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1817 ctcctacgcaaactaaaccaaaacaacaagaaagtaaaagaaagagaaaaaaaaacaccg 1758
Query: 301 agagcattcatgacgggtctttgcatggtcatccaacgaccgaccatgtgaaaaattcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1757 agagcattcatgacgggtctttgcatggtcatccaacgaccgaccatgtgaaaaattcca 1698
Query: 361 ccagttccggtacacactcacacaccactaaaaccagttttgtgacatcggttatcgtta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1697 ccagttccggtacacactcacacaccactaaaaccagttttgtgacatcggttatcgtta 1638
Query: 421 ataatcaaacg 431
|||||||||||
Sbjct: 1637 ataatcaaacg 1627
>At3g04740.1 68416.m00510 expressed protein (SWP1)
Length = 5501
Score = 38.2 bits (19), Expect = 0.059
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 273 agtaaaagaaagagaaaaaaaaa 295
||||||||||| |||||||||||
Sbjct: 5425 agtaaaagaaaaagaaaaaaaaa 5403
>At2g37100.1 68415.m04552 protamine P1 family protein contains Pfam PF00260:
Protamine P1
Length = 1004
Score = 38.2 bits (19), Expect = 0.059
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 276 aaaagaaagagaaaaaaaa 294
|||||||||||||||||||
Sbjct: 969 aaaagaaagagaaaaaaaa 951
>At5g19280.1 68418.m02298 kinase associated protein phosphatase (KAPP) identical
to Kinase associated protein phosphatase (SP:P46014)
[Arabidopsis thaliana]; contains Pfam PF00481: Protein
phosphatase 2C domain; contains Pfam PF00498: FHA domain
Length = 2090
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 74 tgaaggactcagaagtct 91
||||||||||||||||||
Sbjct: 746 tgaaggactcagaagtct 763
>At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin; glycine-rich
protein 17 (GRP17) PMID:11431566; function: pollen
recognition (PMID:10655594)
Length = 1857
Score = 36.2 bits (18), Expect = 0.23
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 270 gaaagtaaaagaaagagaaaaa 291
|||||||||||||||| |||||
Sbjct: 1716 gaaagtaaaagaaagaaaaaaa 1737
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,437
Number of Sequences: 29161
Number of extensions: 17437
Number of successful extensions: 1670
Number of sequences better than 10.0: 73
length of query: 431
length of database: 44,058,232
effective HSP length: 17
effective length of query: 414
effective length of database: 43,562,495
effective search space: 18034872930
effective search space used: 18034872930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)