BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU226089_RAFL14_08_J08.r
(206 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39020.1 68415.m04797 GCN5-related N-acetyltransferase (... 392 e-109
At3g23270.1 68416.m02933 regulator of chromosome condensati... 48 3e-05
At1g25370.1 68414.m03147 expressed protein 48 3e-05
At5g03340.1 68418.m00286 cell division cycle protein 48, pu... 46 1e-04
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein f... 46 1e-04
>At2g39020.1 68415.m04797 GCN5-related N-acetyltransferase (GNAT) family protein
similar to SP|Q9SMB8 Tyramine N-feruloyltransferase 4/11
(EC 2.3.1.110) (Hydroxycinnamoyl- CoA: tyramine
N-hydroxycinnamoyltransferase) {Nicotiana tabacum};
contains Pfam profile PF00583: acetyltransferase, GNAT
family
Length = 1014
Score = 393 bits (198), Expect = e-109
Identities = 204/206 (99%)
Strand = Plus / Minus
Query: 1 aaaaactcgaaacatttcatacattcaacaaaagggttcttttttctcattcagtatcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 aaaaactcgaaacatttcatacattcaacaaaagggttcttttttctcattcagtatcca 939
Query: 61 aaaagtaaggatagagaattcatcatcatcatcatcatcaatgccaacacttgcataaag 120
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 acaagtaagcatagagaattcatcatcatcatcatcatcaatgccaacacttgcataaag 879
Query: 121 taacaacaagaagaaggaaaaaaaacacaaactttaaaagcaagaggaagtgatctgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 taacaacaagaagaaggaaaaaaaacacaaactttaaaagcaagaggaagtgatctgatt 819
Query: 181 cgataactctcagcaacacagcatca 206
||||||||||||||||||||||||||
Sbjct: 818 cgataactctcagcaacacagcatca 793
>At3g23270.1 68416.m02933 regulator of chromosome condensation (RCC1) family
protein contains Pfam domain PF00415: Regulator of
chromosome condensation (RCC1); similar to zinc finger
protein (GI:15811367) [Arabidopsis thaliana]; similar to
chromosome condensation regulator protein (GI:22770461)
[Cicer arietinum]
Length = 3138
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 aattcatcatcatcatcatcatca 100
||||||||||||||||||||||||
Sbjct: 3013 aattcatcatcatcatcatcatca 3036
Score = 40.1 bits (20), Expect = 0.007
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 tcatcatcatcatcatcatc 99
||||||||||||||||||||
Sbjct: 3019 tcatcatcatcatcatcatc 3038
>At1g25370.1 68414.m03147 expressed protein
Length = 1158
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 77 aattcatcatcatcatcatcatca 100
||||||||||||||||||||||||
Sbjct: 1002 aattcatcatcatcatcatcatca 979
Score = 40.1 bits (20), Expect = 0.007
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 80 tcatcatcatcatcatcatc 99
||||||||||||||||||||
Sbjct: 996 tcatcatcatcatcatcatc 977
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative / CDC48,
putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 2671
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 attcatcatcatcatcatcatca 100
|||||||||||||||||||||||
Sbjct: 1 attcatcatcatcatcatcatca 23
Score = 38.2 bits (19), Expect = 0.027
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 80 tcatcatcatcatcatcatcaat 102
|||||||||||||||||| ||||
Sbjct: 6 tcatcatcatcatcatcaccaat 28
>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1670
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 79 ttcatcatcatcatcatcatcaa 101
|||||||||||||||||||||||
Sbjct: 761 ttcatcatcatcatcatcatcaa 783
Score = 34.2 bits (17), Expect = 0.42
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 80 tcatcatcatcatcatcatca 100
||||| |||||||||||||||
Sbjct: 756 tcatcttcatcatcatcatca 776
Score = 30.2 bits (15), Expect = 6.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 82 atcatcatcatcatcatca 100
|||||| ||||||||||||
Sbjct: 755 atcatcttcatcatcatca 773
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,529
Number of Sequences: 29161
Number of extensions: 24529
Number of successful extensions: 7092
Number of sequences better than 10.0: 1035
length of query: 206
length of database: 44,058,232
effective HSP length: 16
effective length of query: 190
effective length of database: 43,591,656
effective search space: 8282414640
effective search space used: 8282414640
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)