BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU225957_RAFL14_01_I09.r
(414 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24990.1 68417.m03586 ubiquitin family protein contains ... 660 0.0
At3g62000.1 68416.m06963 O-methyltransferase family 3 prote... 38 0.056
At3g61990.1 68416.m06962 O-methyltransferase family 3 prote... 36 0.22
At3g52960.1 68416.m05838 peroxiredoxin type 2, putative sim... 34 0.88
At2g26440.1 68415.m03172 pectinesterase family protein cont... 34 0.88
>At4g24990.1 68417.m03586 ubiquitin family protein contains INTERPRO:IPR000626
ubiquitin domain
Length = 909
Score = 660 bits (333), Expect = 0.0
Identities = 377/389 (96%), Gaps = 2/389 (0%)
Strand = Plus / Minus
Query: 26 ttcatcacaggtaaggtaatggacctagtaacctatacagcttcaatacattgggaaagt 85
||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 907 ttcatcacacgtaacgtaatggacctagtaacctatacagcttccatacattgggaaagt 848
Query: 86 aagaagaaaaaacaaataagggacaaagagttacttgaaaagaatttatagttcattttc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 aagaagaaaaaacaaataagggacaaagagttacttgaaaagaatttatagttcattttc 788
Query: 146 tacaaattcaaagatgataaataactccacagcttaaagggaagctttactttactttta 205
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tacacattcaaagatgataaataactccacagcttaaagggaagctttactttactttta 728
Query: 206 gctttctttttttgatttggttttcttctgtaccggaagaattgaaacgatgtgtatgat 265
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gctttctttttttgattttgttttcttctgtaccggaagaattgaaacgatgtgtatgat 668
Query: 266 agatacatgggtcttcctcccttcacaaaatggtgcatgtgcagattactggcttgggtg 325
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 667 agatacattggtcttcctcccttcacaaaatggtgcatgtgcagattactgcctttggtg 608
Query: 326 ctttataaacccttcttctctgttttggatttagcctagagaaggctgtaaaacaacatg 385
|||||| || |||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 607 ctttatcaa-ccttcttctctgttttggatttag-ctagagaaggctgtacaacaacatg 550
Query: 386 catcacaatgactccaccagcaatatctc 414
|||||||||||||||||||||||||||||
Sbjct: 549 catcacaatgactccaccagcaatatctc 521
>At3g62000.1 68416.m06963 O-methyltransferase family 3 protein several
O-methyltransferases - different species; contains Pfam
01596 O-methyltransferase domain
Length = 1106
Score = 38.2 bits (19), Expect = 0.056
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 386 catcacaatgactccacca 404
|||||||||||||||||||
Sbjct: 707 catcacaatgactccacca 689
>At3g61990.1 68416.m06962 O-methyltransferase family 3 protein several
O-methyltransferases - different species; contains Pfam
01596 O-methyltransferase domain
Length = 1203
Score = 36.2 bits (18), Expect = 0.22
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 387 atcacaatgactccacca 404
||||||||||||||||||
Sbjct: 798 atcacaatgactccacca 781
>At3g52960.1 68416.m05838 peroxiredoxin type 2, putative similar to type 2
peroxiredoxin [Brassica rapa subsp. pekinensis]
GI:4928472; contains Pfam profile: PF00578 AhpC/TSA
(alkyl hydroperoxide reductase and thiol-specific
antioxidant) family
Length = 952
Score = 34.2 bits (17), Expect = 0.88
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 337 cttcttctctgttttggattt 357
|||||||||||||||| ||||
Sbjct: 764 cttcttctctgttttgaattt 784
>At2g26440.1 68415.m03172 pectinesterase family protein contains Pfam profile:
PF01095 pectinesterase
Length = 1745
Score = 34.2 bits (17), Expect = 0.88
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 338 ttcttctctgttttgga 354
|||||||||||||||||
Sbjct: 598 ttcttctctgttttgga 582
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,542
Number of Sequences: 29161
Number of extensions: 18542
Number of successful extensions: 1592
Number of sequences better than 10.0: 29
length of query: 414
length of database: 44,058,232
effective HSP length: 17
effective length of query: 397
effective length of database: 43,562,495
effective search space: 17294310515
effective search space used: 17294310515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)