BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU225955_RAFL14_01_I04.r
(432 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g50550.2 68416.m05529 expressed protein isoform contain... 718 0.0
At3g50550.1 68416.m05528 expressed protein isoform contain... 563 e-160
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family pro... 54 1e-06
At5g53920.1 68418.m06709 ribosomal protein L11 methyltransf... 50 2e-05
At5g19320.1 68418.m02302 RAN GTPase activating protein 2 (R... 50 2e-05
>At3g50550.2 68416.m05529 expressed protein isoform contains a non-consensus AT
donor site at intron 1
Length = 379
Score = 718 bits (362), Expect = 0.0
Identities = 376/378 (99%), Gaps = 2/378 (0%)
Strand = Plus / Minus
Query: 2 gttaaaccctctgaagaaacttatataagtgtgaagagaacaactaatctccattgcatt 61
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 378 gttaaaccctctgaagaaacttatataagtgtgaagagaacaa-taatctccattgcatt 320
Query: 62 aacaaactgttttcgacatctctggtattaagagcatgtatagaaatagtatatgattta 121
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aacaaa-tgttttcgacatctctggtattaagagcatgtatagaaatagtatatgattta 261
Query: 122 ccttagcaatagatgatctttgataaactgcttctttcatgctcctaccttttatcctta 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccttagcaatagatgatctttgataaactgcttctttcatgctcctaccttttatcctta 201
Query: 182 aaaaaagcttctcagctaagaaatgtgtacgagtcaatcttgtttccctttgagtagacg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aaaaaagcttctcagctaagaaatgtgtacgagtcaatcttgtttccctttgagtagacg 141
Query: 242 agtgactttatcaacaagggagtcttcttcttcttcctcctcctcatcatcatcatcgtc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 agtgactttatcaacaagggagtcttcttcttcttcctcctcctcatcatcatcatcgtc 81
Query: 302 ttcgtcgtattcctcatctgagctataaatatcgacgatctccttttcgtccgccatgga 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 ttcgtcgtattcctcatctgagctataaatatcgacgatctccttttcgtccgccatgga 21
Query: 362 aatttcaaaaaaagcaaa 379
||||||||||||||||||
Sbjct: 20 aatttcaaaaaaagcaaa 3
>At3g50550.1 68416.m05528 expressed protein isoform contains a non-consensus AT
donor site at intron 1
Length = 578
Score = 563 bits (284), Expect = e-160
Identities = 304/308 (98%), Gaps = 2/308 (0%)
Strand = Plus / Minus
Query: 2 gttaaaccctctgaagaaacttatataagtgtgaagagaacaactaatctccattgcatt 61
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 508 gttaaaccctctgaagaaacttatataagtgtgaagagaacaa-taatctccattgcatt 450
Query: 62 aacaaactgttttcgacatctctggtattaagagcatgtatagaaatagtatatgattta 121
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aacaaa-tgttttcgacatctctggtattaagagcatgtatagaaatagtatatgattta 391
Query: 122 ccttagcaatagatgatctttgataaactgcttctttcatgctcctaccttttatcctta 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ccttagcaatagatgatctttgataaactgcttctttcatgctcctaccttttatcctta 331
Query: 182 aaaaaagcttctcagctaagaaatgtgtacgagtcaatcttgtttccctttgagtagacg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaaaaagcttctcagctaagaaatgtgtacgagtcaatcttgtttccctttgagtagacg 271
Query: 242 agtgactttatcaacaagggagtcttcttcttcttcctcctcctcatcatcatcatcgtc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 270 agtgactttatcaacaagggagtcttcttcttcttcctcctcctcatcatcatcatcttc 211
Query: 302 ttcgtcgt 309
||| ||||
Sbjct: 210 ttcatcgt 203
Score = 165 bits (83), Expect = 4e-40
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 285 tcatcatcatcatcgtcttcgtcgtattcctcatctgagctataaatatcgacgatctcc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 tcatcatcatcatcgtcttcgtcgtattcctcatctgagctataaatatcgacgatctcc 24
Query: 345 ttttcgtccgccatggaaatttc 367
|||||||||||||||||||||||
Sbjct: 23 ttttcgtccgccatggaaatttc 1
>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein contains Pfam
domian PF00096: Zinc finger, C2H2 type
Length = 1215
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 264 tcttcttcttcttcctcctcctcatcatcatcatc 298
||||| ||||||||||||||||||||||| |||||
Sbjct: 887 tcttcctcttcttcctcctcctcatcatcttcatc 853
>At5g53920.1 68418.m06709 ribosomal protein L11 methyltransferase-related
similar to ribosomal protein L11 methyltransferase; PrmA
[Escherichia coli] GI:455655
Length = 1296
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 265 cttcttcttcttcctcctcctcatc 289
|||||||||||||||||||||||||
Sbjct: 143 cttcttcttcttcctcctcctcatc 167
Score = 32.2 bits (16), Expect = 3.6
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 264 tcttcttcttcttcctcctc 283
||||||||||| ||||||||
Sbjct: 145 tcttcttcttcctcctcctc 164
>At5g19320.1 68418.m02302 RAN GTPase activating protein 2 (RanGAP2) identical to
RAN GTPase activating protein 2 GI:6708468 from
[Arabidopsis thaliana]
Length = 1982
Score = 50.1 bits (25), Expect = 2e-05
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 264 tcttcttcttcttcctcctcctcatcatcatcatcgtcttc 304
||||| |||||||| || ||||||||||||||||| |||||
Sbjct: 1712 tcttcatcttcttcgtcttcctcatcatcatcatcttcttc 1672
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 43,247
Number of Sequences: 29161
Number of extensions: 43247
Number of successful extensions: 11703
Number of sequences better than 10.0: 930
length of query: 432
length of database: 44,058,232
effective HSP length: 17
effective length of query: 415
effective length of database: 43,562,495
effective search space: 18078435425
effective search space used: 18078435425
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)