BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orF204.F
(615 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg01410 orf204#hypothetical protein 1219 0.0
At3g28510.1 68416.m03561 AAA-type ATPase family protein con... 38 0.085
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,... 34 1.3
At4g37680.1 68417.m05329 expressed protein contains Pfam do... 34 1.3
At4g19530.1 68417.m02873 disease resistance protein (TIR-NB... 34 1.3
>AtMg01410 orf204#hypothetical protein
Length = 615
Score = 1219 bits (615), Expect = 0.0
Identities = 615/615 (100%)
Strand = Plus / Plus
Query: 1 atgtttggggggcggagaagacgtctcccccaagatgggacttttaaccaaacacagcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtttggggggcggagaagacgtctcccccaagatgggacttttaaccaaacacagcct 60
Query: 61 tttgatcgactggttggcagtaggcactctttctcctttgacttaaagtcggccactgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttgatcgactggttggcagtaggcactctttctcctttgacttaaagtcggccactgat 120
Query: 121 cgttggcctttagtctttctgtttgaggtggtgcagtacctatttgaccgctcctttgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgttggcctttagtctttctgtttgaggtggtgcagtacctatttgaccgctcctttgcc 180
Query: 181 tcaagtgtggttaattctgcatttgcatgcaatatctttgaggtgccttttgttaaactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcaagtgtggttaattctgcatttgcatgcaatatctttgaggtgccttttgttaaactt 240
Query: 241 aaacgaaggttctctcaagtatgctttgtggcagggcagccattgggatatcacggttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaacgaaggttctctcaagtatgctttgtggcagggcagccattgggatatcacggttct 300
Query: 301 tggcctactttcgcgctatcacaccatatattagtgtggtggtgtgcgaaacaggtgcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggcctactttcgcgctatcacaccatatattagtgtggtggtgtgcgaaacaggtgcat 360
Query: 361 cctggtgtacgctttacatcgtacgcggtactcggtgatgatgttgtcattgccgatcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctggtgtacgctttacatcgtacgcggtactcggtgatgatgttgtcattgccgatcag 420
Query: 421 gaagtcgccaaagtctatgaatctgctttgggtggattgggggtcaaaataagttatcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaagtcgccaaagtctatgaatctgctttgggtggattgggggtcaaaataagttatcaa 480
Query: 481 aagtccttgatccccattcaggttttgctgagtttgctaaatgcttcagggttagggaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aagtccttgatccccattcaggttttgctgagtttgctaaatgcttcagggttagggaat 540
Query: 541 ctcgtattaaagagagagatctttccccgagagtcaggagttctttccctaatgtcagtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctcgtattaaagagagagatctttccccgagagtcaggagttctttccctaatgtcagtt 600
Query: 601 ccttcgctagcctag 615
|||||||||||||||
Sbjct: 601 ccttcgctagcctag 615
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains Pfam profile:
PF00004 ATPase family
Length = 1841
Score = 38.2 bits (19), Expect = 0.085
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 120 tcgttggcctttagtcttt 138
|||||||||||||||||||
Sbjct: 407 tcgttggcctttagtcttt 389
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, putative almost
identical to 26S proteasome AAA-ATPase subunit RPT6a
GI:6652888 from [Arabidopsis thaliana]; almost identical
to a member of conserved Sug1 CAD family AtSUG1
GI:13537115 from [Arabidopsis thaliana]
Length = 1741
Score = 34.2 bits (17), Expect = 1.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 251 tctctcaagtatgcttt 267
|||||||||||||||||
Sbjct: 246 tctctcaagtatgcttt 230
>At4g37680.1 68417.m05329 expressed protein contains Pfam domain, PF03006:
Uncharacterised protein family (Hly-III / UPF0073)
Length = 1546
Score = 34.2 bits (17), Expect = 1.3
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 549 aaagagagagatctttc 565
|||||||||||||||||
Sbjct: 123 aaagagagagatctttc 139
>At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR class), putative
domain signature TIR-NBS-LRR exists, suggestive of a
disease resistance protein.
Length = 3914
Score = 34.2 bits (17), Expect = 1.3
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 61 tttgatcgactggttgg 77
|||||||||||||||||
Sbjct: 3291 tttgatcgactggttgg 3307
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,642
Number of Sequences: 29161
Number of extensions: 15642
Number of successful extensions: 1100
Number of sequences better than 10.0: 22
length of query: 615
length of database: 44,058,232
effective HSP length: 17
effective length of query: 598
effective length of database: 43,562,495
effective search space: 26050372010
effective search space used: 26050372010
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)