BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orF105b.F
(318 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg01400 orf105b#hypothetical protein 630 e-180
At5g16590.1 68418.m01942 leucine-rich repeat transmembrane ... 36 0.17
At1g66480.1 68414.m07552 expressed protein 34 0.67
At5g40640.1 68418.m04933 expressed protein 32 2.6
At5g13950.1 68418.m01631 expressed protein 32 2.6
>AtMg01400 orf105b#hypothetical protein
Length = 318
Score = 630 bits (318), Expect = e-180
Identities = 318/318 (100%)
Strand = Plus / Plus
Query: 1 atgaaataccattttagctctatggagccgtggtggaaaagagaattttcattttgtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgaaataccattttagctctatggagccgtggtggaaaagagaattttcattttgtata 60
Query: 61 ccggcgatttatatcaaaatggcatcaatctcactttttcaaaatagttggctgaagatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccggcgatttatatcaaaatggcatcaatctcactttttcaaaatagttggctgaagatg 120
Query: 121 aaacatctccctagttgcctattcacccagacaaccaacactttaggcatttacaggaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaacatctccctagttgcctattcacccagacaaccaacactttaggcatttacaggaaa 180
Query: 181 aaaaaacctaaccatagtcgtgacaaccctagaatcaactcaaacctttcgaccaactat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaaaacctaaccatagtcgtgacaaccctagaatcaactcaaacctttcgaccaactat 240
Query: 241 gcccaagctaagtcagttgagagatcaagatccaatagcctcaactcaggcccaaaccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcccaagctaagtcagttgagagatcaagatccaatagcctcaactcaggcccaaaccca 300
Query: 301 ttagagaatgccacgtag 318
||||||||||||||||||
Sbjct: 301 ttagagaatgccacgtag 318
>At5g16590.1 68418.m01942 leucine-rich repeat transmembrane protein kinase,
putative
Length = 2248
Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 249 taagtcagttgagagatc 266
||||||||||||||||||
Sbjct: 2151 taagtcagttgagagatc 2168
>At1g66480.1 68414.m07552 expressed protein
Length = 739
Score = 34.2 bits (17), Expect = 0.67
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 285 ctcaggcccaaacccat 301
|||||||||||||||||
Sbjct: 466 ctcaggcccaaacccat 450
>At5g40640.1 68418.m04933 expressed protein
Length = 2230
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 203 acaaccctagaatcaa 218
||||||||||||||||
Sbjct: 231 acaaccctagaatcaa 216
>At5g13950.1 68418.m01631 expressed protein
Length = 3205
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 41 gagaattttcattttg 56
||||||||||||||||
Sbjct: 581 gagaattttcattttg 596
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,189
Number of Sequences: 29161
Number of extensions: 10189
Number of successful extensions: 753
Number of sequences better than 10.0: 15
length of query: 318
length of database: 44,058,232
effective HSP length: 16
effective length of query: 302
effective length of database: 43,591,656
effective search space: 13164680112
effective search space used: 13164680112
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)