BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orF111d.F
(336 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg01370 orf111d#hypothetical protein 666 0.0
At1g01540.2 68414.m00071 protein kinase family protein cont... 36 0.18
At1g01540.1 68414.m00070 protein kinase family protein cont... 36 0.18
AtMg00060 nad5c#nad5.3 34 0.71
AtMg00513 nad5a#nad5.1 34 0.71
>AtMg01370 orf111d#hypothetical protein
Length = 336
Score = 666 bits (336), Expect = 0.0
Identities = 336/336 (100%)
Strand = Plus / Plus
Query: 1 atgaaaatttcatatttcataagaagaggaaaaaaaacatcgcgacggagtcactttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgaaaatttcatatttcataagaagaggaaaaaaaacatcgcgacggagtcactttatt 60
Query: 61 aaaatgaaaaagaacattataacaactcagttgttcaaacccgataacgcttttattttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaatgaaaaagaacattataacaactcagttgttcaaacccgataacgcttttattttt 120
Query: 121 ttttccggtatacacggctctgttaatagagcgacatataaatacaaaatctcgaagacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttttccggtatacacggctctgttaatagagcgacatataaatacaaaatctcgaagacc 180
Query: 181 tttggcagatttcttgctcatatatcttgtcttatttgtattttatcgaaaagaatcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttggcagatttcttgctcatatatcttgtcttatttgtattttatcgaaaagaatcttt 240
Query: 241 gttttgtctttctcagttattggatctttttgccatccgtcgattgtccatttcgattgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gttttgtctttctcagttattggatctttttgccatccgtcgattgtccatttcgattgt 300
Query: 301 cttttgttttttcttgacacaactccttgcctatga 336
||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttttgttttttcttgacacaactccttgcctatga 336
>At1g01540.2 68414.m00071 protein kinase family protein contains protein kinase
domain, Pfam:PF00069; contains serine/threonine protein
kinase domain, INTERPRO:IPR002290
Length = 1877
Score = 36.2 bits (18), Expect = 0.18
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 115 atttttttttccggtata 132
||||||||||||||||||
Sbjct: 1670 atttttttttccggtata 1687
>At1g01540.1 68414.m00070 protein kinase family protein contains protein kinase
domain, Pfam:PF00069; contains serine/threonine protein
kinase domain, INTERPRO:IPR002290
Length = 1908
Score = 36.2 bits (18), Expect = 0.18
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 115 atttttttttccggtata 132
||||||||||||||||||
Sbjct: 1707 atttttttttccggtata 1724
>AtMg00060 nad5c#nad5.3
Length = 2007
Score = 34.2 bits (17), Expect = 0.71
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 209 gtcttatttgtatttta 225
|||||||||||||||||
Sbjct: 656 gtcttatttgtatttta 672
>AtMg00513 nad5a#nad5.1
Length = 2007
Score = 34.2 bits (17), Expect = 0.71
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 209 gtcttatttgtatttta 225
|||||||||||||||||
Sbjct: 656 gtcttatttgtatttta 672
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,549
Number of Sequences: 29161
Number of extensions: 15549
Number of successful extensions: 1412
Number of sequences better than 10.0: 36
length of query: 336
length of database: 44,058,232
effective HSP length: 17
effective length of query: 319
effective length of database: 43,562,495
effective search space: 13896435905
effective search space used: 13896435905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)