BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cox1.F
(1584 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg01360 cox1#cytochrome c oxidase subunit 1 3140 0.0
At2g36870.1 68415.m04520 xyloglucan:xyloglucosyl transferas... 36 0.88
At5g47980.1 68418.m05927 transferase family protein similar... 34 3.5
At5g23535.1 68418.m02762 KOW domain-containing protein siml... 34 3.5
At3g50010.1 68416.m05468 DC1 domain-containing protein cont... 34 3.5
>AtMg01360 cox1#cytochrome c oxidase subunit 1
Length = 1584
Score = 3140 bits (1584), Expect = 0.0
Identities = 1584/1584 (100%)
Strand = Plus / Plus
Query: 1 atgaaaaatctggttcgatggctgttctccacaaaccacaaggatatagggactctctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgaaaaatctggttcgatggctgttctccacaaaccacaaggatatagggactctctat 60
Query: 61 ttcattttcggtgccattgctggagtgatgggcacatgcttctcagtactgattcgtatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcattttcggtgccattgctggagtgatgggcacatgcttctcagtactgattcgtatg 120
Query: 121 gaattagcacgacccggcgatcaaattcttggtgggaatcatcaactttataatgtttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaattagcacgacccggcgatcaaattcttggtgggaatcatcaactttataatgtttta 180
Query: 181 ataacagctcatgcttttttaatgatcttttttatggttatgccggcgatgataggtgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ataacagctcatgcttttttaatgatcttttttatggttatgccggcgatgataggtgga 240
Query: 241 tttggtaattggtttgttccgattctgataggtgcacctgacatggcatttccacgatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttggtaattggtttgttccgattctgataggtgcacctgacatggcatttccacgatta 300
Query: 301 aataatatttcattctggttgttgccaccaagtctcttgctcctattaagctcagcctta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aataatatttcattctggttgttgccaccaagtctcttgctcctattaagctcagcctta 360
Query: 361 gtagaagtaggtagcggcactgggtggacggtctatccgcccttaagtggtattaccagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtagaagtaggtagcggcactgggtggacggtctatccgcccttaagtggtattaccagt 420
Query: 421 cattctggaggagcagttgatttagcaatttttagtcttcatctatctggtgtttcatcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cattctggaggagcagttgatttagcaatttttagtcttcatctatctggtgtttcatcc 480
Query: 481 attttaggttctatcaattttataacaactatcttcaacatgcgtggacctggaatgact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attttaggttctatcaattttataacaactatcttcaacatgcgtggacctggaatgact 540
Query: 541 atgcatagattacccctatttgtgtggtccgttctagtgacagcattcctacttttatta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atgcatagattacccctatttgtgtggtccgttctagtgacagcattcctacttttatta 600
Query: 601 tcactcccggtactggcaggggcaattaccatgttattaaccgatcgaaactttaataca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcactcccggtactggcaggggcaattaccatgttattaaccgatcgaaactttaataca 660
Query: 661 accttttttgatcccgctggagggggagacccaattttataccagcatctcttttggttc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 accttttttgatcccgctggagggggagacccaattttataccagcatctcttttggttc 720
Query: 721 ttcggtcatccagaggtgtatattctcattctgcctggattcggtatcataagtcatatc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttcggtcatccagaggtgtatattctcattctgcctggattcggtatcataagtcatatc 780
Query: 781 gtttcgactttttcgggaaaaccggtcttcgggtatctaggcatggtttatgccatgatc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gtttcgactttttcgggaaaaccggtcttcgggtatctaggcatggtttatgccatgatc 840
Query: 841 agtattggtgtcttaggatttcttgtttgggctcatcatatgtttactgtgggcttagac 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 agtattggtgtcttaggatttcttgtttgggctcatcatatgtttactgtgggcttagac 900
Query: 901 gtagatacccgtgcctacttcaccgcagctaccatgatcatagctgtccccactggaatc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gtagatacccgtgcctacttcaccgcagctaccatgatcatagctgtccccactggaatc 960
Query: 961 aaaatctttagttggatcgctaccatgtgggggggttcgatacaatacaaaacacccatg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 aaaatctttagttggatcgctaccatgtgggggggttcgatacaatacaaaacacccatg 1020
Query: 1021 ttatttgctgtaggattcatctttttgttcaccataggaggactcactggaatagtcctg 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 ttatttgctgtaggattcatctttttgttcaccataggaggactcactggaatagtcctg 1080
Query: 1081 gcaaattcagggctagacattgctctacatgatacttattatgtggttgcacatttccat 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gcaaattcagggctagacattgctctacatgatacttattatgtggttgcacatttccat 1140
Query: 1141 tatgtactttctatgggagccgtttttgctttatttgcaggattttactattgggtgggt 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tatgtactttctatgggagccgtttttgctttatttgcaggattttactattgggtgggt 1200
Query: 1201 aaaatctttggtcggacataccctgaaactttaggtcaaatccatttttggatcactttt 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 aaaatctttggtcggacataccctgaaactttaggtcaaatccatttttggatcactttt 1260
Query: 1261 ttcggggttaatttgaccttctttcctatgcatttcttagggctttcaggtatgccacgt 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ttcggggttaatttgaccttctttcctatgcatttcttagggctttcaggtatgccacgt 1320
Query: 1321 cgtattccagattatccggatgcttacgctggatggaatgccctttccagttttggctct 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 cgtattccagattatccggatgcttacgctggatggaatgccctttccagttttggctct 1380
Query: 1381 tatatatccgtagttgggatttgttgtttcttcgtggtcgtaacaatcactttaagcagt 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 tatatatccgtagttgggatttgttgtttcttcgtggtcgtaacaatcactttaagcagt 1440
Query: 1441 ggaaataacaaaagatgtgctccgagtccttgggctcttgaactgaattcaactacactg 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 ggaaataacaaaagatgtgctccgagtccttgggctcttgaactgaattcaactacactg 1500
Query: 1501 gaatggatggtacaaagtcctcctgcttttcatacttttggagaacttccagctatcaag 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 gaatggatggtacaaagtcctcctgcttttcatacttttggagaacttccagctatcaag 1560
Query: 1561 gagacgaaaagctatgtgaagtaa 1584
||||||||||||||||||||||||
Sbjct: 1561 gagacgaaaagctatgtgaagtaa 1584
>At2g36870.1 68415.m04520 xyloglucan:xyloglucosyl transferase, putative /
xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
cellulase (xyloglucan endo-transglycosylase) GI:311835
from [Tropaeolum majus]
Length = 1175
Score = 36.2 bits (18), Expect = 0.88
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 961 aaaatctttagttggatc 978
||||||||||||||||||
Sbjct: 546 aaaatctttagttggatc 529
>At5g47980.1 68418.m05927 transferase family protein similar to alcohol
acyltransferase [Fragaria x
ananassa][GI:10121328][PMID:10810141], deacetylvindoline
4-O-acetyltransferase [Catharanthus
roseus][GI:4091808][PMID:9681034]
Length = 1589
Score = 34.2 bits (17), Expect = 3.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 955 ggaatcaaaatctttag 971
|||||||||||||||||
Sbjct: 438 ggaatcaaaatctttag 422
>At5g23535.1 68418.m02762 KOW domain-containing protein simlar to SP|P12876 50S
ribosomal protein L24 (BL23) (12 kDa DNA-binding protein)
(HPB12) {Bacillus subtilis}; contains Pfam profile
PF00467: KOW motif
Length = 875
Score = 34.2 bits (17), Expect = 3.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1358 atgccctttccagtttt 1374
|||||||||||||||||
Sbjct: 639 atgccctttccagtttt 623
>At3g50010.1 68416.m05468 DC1 domain-containing protein contains Pfam profile
PF03107: DC1 domain
Length = 2419
Score = 34.2 bits (17), Expect = 3.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1163 tttttgctttatttgca 1179
|||||||||||||||||
Sbjct: 2228 tttttgctttatttgca 2244
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,746
Number of Sequences: 29161
Number of extensions: 37746
Number of successful extensions: 706
Number of sequences better than 10.0: 10
length of query: 1584
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1566
effective length of database: 43,533,334
effective search space: 68173201044
effective search space used: 68173201044
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)