BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= orF145c.F
(438 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AtMg01350 orf145c#hypothetical protein 868 0.0
AtMg00040 orf315#hypothetical protein 72 4e-12
AtMg01080 atp9#ATPase subunit 9 72 4e-12
At2g07671.1 68415.m00894 H+-transporting two-sector ATPase,... 72 4e-12
At3g44910.1 68416.m04838 cation/hydrogen exchanger, putativ... 34 0.93
>AtMg01350 orf145c#hypothetical protein
Length = 438
Score = 868 bits (438), Expect = 0.0
Identities = 438/438 (100%)
Strand = Plus / Plus
Query: 1 atgacaaagcgtgagtataattctcaacccgagatgaaggaggaggtgttagcctacttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgacaaagcgtgagtataattctcaacccgagatgaaggaggaggtgttagcctacttg 60
Query: 61 ctgcagctgtctgcgtcgctagttctgccggtagccatttggctgattgctgccggacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgcagctgtctgcgtcgctagttctgccggtagccatttggctgattgctgccggacag 120
Query: 121 atttttacctgtttacgcggatatactatctccaattaccaagaaaaagtagaggagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atttttacctgtttacgcggatatactatctccaattaccaagaaaaagtagaggagaag 180
Query: 181 ctctgctcgactttagtagataagatttcagagaaactggccgatttatttcccgtatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctctgctcgactttagtagataagatttcagagaaactggccgatttatttcccgtatat 240
Query: 241 ggtatcacgccgtcaaggaacgcaccctttcctactattctcgagcaattgctcgccaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggtatcacgccgtcaaggaacgcaccctttcctactattctcgagcaattgctcgccaca 300
Query: 301 gtttcgcaagaggagcgcttggcctacctctccaatatgtataacagtttgatagaaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtttcgcaagaggagcgcttggcctacctctccaatatgtataacagtttgatagaaatg 360
Query: 361 ggtatcgacagcccctgtttttatcccatagttcaaacatttctttttctaatgggcggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggtatcgacagcccctgtttttatcccatagttcaaacatttctttttctaatgggcggc 420
Query: 421 ggcggcgggcccgcttga 438
||||||||||||||||||
Sbjct: 421 ggcggcgggcccgcttga 438
>AtMg00040 orf315#hypothetical protein
Length = 948
Score = 71.9 bits (36), Expect = 4e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 atgacaaagcgtgagtataattctcaacccgagatg 36
||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgacaaagcgtgagtataattctcaacccgagatg 36
>AtMg01080 atp9#ATPase subunit 9
Length = 258
Score = 71.9 bits (36), Expect = 4e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 atgacaaagcgtgagtataattctcaacccgagatg 36
||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgacaaagcgtgagtataattctcaacccgagatg 36
>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C subunit family
protein similar to ATPase subunit 9 [Arabidopsis
thaliana] GI:15215920; contains Pfam profile PF00137:
ATP synthase subunit C
Length = 449
Score = 71.9 bits (36), Expect = 4e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 atgacaaagcgtgagtataattctcaacccgagatg 36
||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgacaaagcgtgagtataattctcaacccgagatg 36
>At3g44910.1 68416.m04838 cation/hydrogen exchanger, putative (CHX12) monovalent
cation:proton antiporter family 2 (CPA2) member,
PMID:11500563
Length = 2118
Score = 34.2 bits (17), Expect = 0.93
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 202 aagatttcagagaaact 218
|||||||||||||||||
Sbjct: 1019 aagatttcagagaaact 1003
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,774
Number of Sequences: 29161
Number of extensions: 10774
Number of successful extensions: 833
Number of sequences better than 10.0: 21
length of query: 438
length of database: 44,058,232
effective HSP length: 17
effective length of query: 421
effective length of database: 43,562,495
effective search space: 18339810395
effective search space used: 18339810395
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)