BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= orF107h.F
         (384 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AtMg01330  orf107h#hypothetical protein                           761   0.0  
At1g23900.2  68414.m03016 gamma-adaptin, putative similar to...    34   0.81 
At1g23900.1  68414.m03015 gamma-adaptin, putative similar to...    34   0.81 
At5g57240.1  68418.m07151 oxysterol-binding family protein l...    32   3.2  
At5g47455.4  68418.m05860 expressed protein                        32   3.2  

>AtMg01330 orf107h#hypothetical protein
          Length = 384

 Score =  761 bits (384), Expect = 0.0
 Identities = 384/384 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctccccgccggttgttggaacgacacgagccgggacgggcctggattcagaaagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgctccccgccggttgttggaacgacacgagccgggacgggcctggattcagaaagatg 60

                                                                       
Query: 61  aagggccccaaagtagaaatagggggttacaaattccccatctcattgggggcggaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aagggccccaaagtagaaatagggggttacaaattccccatctcattgggggcggaaaac 120

                                                                       
Query: 121 gaatcgacatctcgatgtgatacagccttttcttttttagttgggaaagaacggcgaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaatcgacatctcgatgtgatacagccttttcttttttagttgggaaagaacggcgaagt 180

                                                                       
Query: 181 ccatccgaaccgaaccgtccaatgaagaataagaggagagcaaagcccaatggggaagcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccatccgaaccgaaccgtccaatgaagaataagaggagagcaaagcccaatggggaagcg 240

                                                                       
Query: 241 catgcggagcaggcacggagaaaaatcagtgtggaggagaagcagccgagctcattccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 catgcggagcaggcacggagaaaaatcagtgtggaggagaagcagccgagctcattccct 300

                                                                       
Query: 301 tcgcatcctgggcccaaagcagtgcagtctttcctggccaaatcaaggatttggggcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcgcatcctgggcccaaagcagtgcagtctttcctggccaaatcaaggatttggggcttc 360

                                   
Query: 361 ttgctacgatacttaactatataa 384
           ||||||||||||||||||||||||
Sbjct: 361 ttgctacgatacttaactatataa 384



>At1g23900.2 68414.m03016 gamma-adaptin, putative similar to SP|O43747
            Adapter-related protein complex 1 gamma 1 subunit
            (Gamma-adaptin) (Clathrin assembly protein complex 1
            gamma-1 large chain) {Homo sapiens}; contains Pfam
            profiles PF01602: Adaptin N terminal region, PF02883:
            Adaptin C-terminal domain
          Length = 3211

 Score = 34.2 bits (17), Expect = 0.81
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 149  tttcttttttagttggg 165
            |||||||||||||||||
Sbjct: 2921 tttcttttttagttggg 2905



>At1g23900.1 68414.m03015 gamma-adaptin, putative similar to SP|O43747
            Adapter-related protein complex 1 gamma 1 subunit
            (Gamma-adaptin) (Clathrin assembly protein complex 1
            gamma-1 large chain) {Homo sapiens}; contains Pfam
            profiles PF01602: Adaptin N terminal region, PF02883:
            Adaptin C-terminal domain
          Length = 3141

 Score = 34.2 bits (17), Expect = 0.81
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 149  tttcttttttagttggg 165
            |||||||||||||||||
Sbjct: 2851 tttcttttttagttggg 2835



>At5g57240.1 68418.m07151 oxysterol-binding family protein low similarity to
            SP|P22059 Oxysterol-binding protein 1 {Homo sapiens};
            contains Pfam profile PF01237: Oxysterol-binding protein
          Length = 1441

 Score = 32.2 bits (16), Expect = 3.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 270  tgtggaggagaagcag 285
            ||||||||||||||||
Sbjct: 1112 tgtggaggagaagcag 1127



>At5g47455.4 68418.m05860 expressed protein
          Length = 536

 Score = 32.2 bits (16), Expect = 3.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 278 agaagcagccgagctc 293
           ||||||||||||||||
Sbjct: 353 agaagcagccgagctc 368



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9622
Number of Sequences: 29161
Number of extensions: 9622
Number of successful extensions: 647
Number of sequences better than 10.0: 22
length of query: 384
length of database: 44,058,232
effective HSP length: 17
effective length of query: 367
effective length of database: 43,562,495
effective search space: 15987435665
effective search space used: 15987435665
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)